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SCNpilot_cont_750_bf_scaffold_598

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_598_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..475)
DNA (474bp) protein (158aa)
S-adenosylmethionine decarboxylase proenzyme (EC:4.1.1.50)
S-adenosylmethionine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00039304}; Short=AdoMetDC {ECO:0000256|HAMAP-Rule:MF_00465};; Short=SAMDC {ECO:0000256|HAMAP-Rule:MF_00465};; EC=4.1.1.50 {ECO:0000256|HAMAP-Rule:MF_00465, ECO:0000256|SAAS:SAAS00093036};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
S-adenosylmethionine decarboxylase n=1 Tax=Dyella ginsengisoli RepID=UPI000348CC58
SCNpilot_cont_750_bf_scaffold_598_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

906..1601
DNA (696bp) protein (232aa)
DNA-binding transcriptional dual regulator Crp n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIK1_9GAMM rbh
cAMP-binding protein rbh
DNA-binding transcriptional dual regulator Crp {ECO:0000313|EMBL:EIL93442.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
SCNpilot_cont_750_bf_scaffold_598_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1818..4763)
DNA (2946bp) protein (982aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NI59_9GAMM rbh
diguanylate cyclase (GGDEF) domain-containing protein rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:AGG90579.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4878..6995
DNA (2118bp) protein (706aa)
ATP-dependent DNA helicase DinG n=1 Tax=Rhodanobacter denitrificans RepID=I4WX74_9GAMM rbh
DNA helicase, Rad3 {ECO:0000313|EMBL:AGG90580.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA helicase, Rad3 rbh
SCNpilot_cont_750_bf_scaffold_598_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6992..7543
DNA (552bp) protein (184aa)
Histidine utilization protein HutD n=1 Tax=Rhodanobacter denitrificans RepID=I4WX75_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90581.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_6
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7616..8194
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034671D5
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_598_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8288..8485
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIV2_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_598_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8496..9092
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX78_9GAMM rbh
putative S-adenosylmethionine-dependent methyltransferase rbh
Putative S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:AGG90584.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9130..9534
DNA (405bp) protein (135aa)
UPF0225 protein UUA_01469 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WTB7_9GAMM
UPF0225 protein UUA_01469 {ECO:0000256|HAMAP-Rule:MF_00612}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_598_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9544..11229)
DNA (1686bp) protein (562aa)
DNA ligase B {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019096}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01587, ECO:0000256|SAAS:SAAS00019091};; Polydeoxyribonucleotide synthase [NAD(+)] B {ECO:0000256|HAMAP-Rule:MF_01587}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
DNA ligase B n=1 Tax=Rhodanobacter denitrificans RepID=M4NSW7_9GAMM
NAD-dependent DNA ligase
SCNpilot_cont_750_bf_scaffold_598_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11324..12100)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WX81_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90587.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_12
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12104..13027)
DNA (924bp) protein (308aa)
LysR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL8_9GAMM rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:EIM02110.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_598_13
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13122..14345
DNA (1224bp) protein (408aa)
Major facilitator superfamily protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL7_9GAMM rbh
Major facilitator superfamily protein {ECO:0000313|EMBL:EIM02109.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
major facilitator superfamily protein rbh
SCNpilot_cont_750_bf_scaffold_598_14
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14266..16395)
DNA (2130bp) protein (710aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL6_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIM02108.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_598_15
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16454..17785)
DNA (1332bp) protein (444aa)
Amino acid transporter n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL5_9GAMM rbh
Amino acid transporter {ECO:0000313|EMBL:EIM02107.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
amino acid transporter
SCNpilot_cont_750_bf_scaffold_598_16
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17903..18232
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRL4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02106.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_750_bf_scaffold_598_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18243..18449)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WRK9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02101.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
SCNpilot_cont_750_bf_scaffold_598_18
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18449..19198)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BBY5_9RHIZ
Membrane protein {ECO:0000313|EMBL:KIF65909.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_598_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19300..20352
DNA (1053bp) protein (351aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
DNA polymerase IV n=1 Tax=Dyella japonica RepID=UPI0002DD34EC rbh
nucleotidyltransferase/DNA polymerase involved in DNA repair
SCNpilot_cont_750_bf_scaffold_598_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20477..20743
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDX9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97670.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_598_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20810..21136)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99009.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_598_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21257..21832
DNA (576bp) protein (192aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Rhodanobacter denitrificans RepID=M4NI09_9GAMM
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGG90514.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21829..22296
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NHV6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90515.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_598_24
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22553..23029)
DNA (477bp) protein (159aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UUA8_PSEUP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AER54997.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_cont_750_bf_scaffold_598_25
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(23141..23581)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6BYV4_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL62249.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_598_26
unknown

Not on your lists

comp(23668..23781)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_598_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24071..24871)
DNA (801bp) protein (267aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|SAAS:SAAS00018107}; EC=1.17.1.8 {ECO:0000256|SAAS:SAAS00018107};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY4_9GAMM
SCNpilot_cont_750_bf_scaffold_598_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24983..25441
DNA (459bp) protein (153aa)
MarR family transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR6_9GAMM
MarR family transcriptional regulator {ECO:0000313|EMBL:EIL99007.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
ohrR; organic hydroperoxide resistance transcriptional regulator
SCNpilot_cont_750_bf_scaffold_598_29
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25571..25996
DNA (426bp) protein (142aa)
Organic hydroperoxide resistance protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHR7_9GAMM
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:EIL99008.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
peroxiredoxin, Ohr subfamily
SCNpilot_cont_750_bf_scaffold_598_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26178..28034)
DNA (1857bp) protein (619aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dihydrolipoamide dehydrogenase (EC:1.8.1.4) rbh
Dihydrolipoamide dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDY5_9GAMM rbh
Displaying items 1-30 of 33 in total

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