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scnpilot_p_inoc_scaffold_3652_curated_4

Organism: scnpilot_dereplicated_Sphingomonadales_1

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38
Location: 1653..2639

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLV0_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 85.9
  • Coverage: 305.0
  • Bit_score: 518
  • Evalue 6.00e-144
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.9
  • Coverage: 305.0
  • Bit_score: 518
  • Evalue 8.40e-144
RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 84.9
  • Coverage: 299.0
  • Bit_score: 508
  • Evalue 1.10e-141

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Taxonomy

Novosphingobium tardaugens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 987
GTGCTCCCTTCTGGACGCCCATCAGGGGTCCGCAAAATATCGGTCGACACTGTGAAAGGTATGGGAAAAGTGAGCAATCAAAAGACCGGCAAAACGAGGGCCCTTGCCGTTCCCGCTCTGAGCGGGGAACAGAGCCTCAATCGTTATCTCGCCGAAATCAAGAAGTTCCCGGTGCTGACGCCCGAGCAGGAATATATGCTCGCGAAGCGCTATCAGGAACATGAGGATTCCGAAGCTGCCGCGCAGCTCGTGACCAGCCATTTGCGGCTCGTGGCCAAGATCGCCATGGGCTATCGCGGCTATGGCCTGCCCCTGGCCGACCTCATCAGCGAAGGCAATGTGGGGCTGATGCAGGGCGTGAAGAAGTTCGAGGCCGATCGCGGCTTCCGCCTGGCGACCTATGCCATGTGGTGGATCAAGGCCAGCATGCAGGAATTCATCCTGCGCAGCTGGAGCCTGGTGAAGATCGGTACCACGGCCGCCCAGAAGAAGCTGTTCTTCAACCTGCGCCGCATGAAGCGCAACCTCGACGCCTATGAAGATTCCGACCTGCGTCCGGAAGACGTCGCCAAGATCGCCCACGATCTCGGCGTGGCCGAGCAGGAAGTGATCAACATGAACCGGCGCATGATGATGGGCGGCGATGCCTCGCTCAACGTCTCCATGCGCAATGACGAGGAAGGTTCCGGCCAGTGGCAGGACTTCCTGGCAGACGATACCCCGCTGCAGGACGAGCAAGTGGCCGAGGCCGAAGAGGCCAAGCTGCGGCATGAAATGCTGACCGAAGCCATGGACAGCCTCAACGACCGCGAAAAGCATATCCTGACCGAGCGGCGCCTGGTGGAAAATCCCCGGACGCTGGAAGAACTCAGCCAGGAATATGACGTCAGCCGCGAACGCATCCGCCAGATCGAGGTGCGCGCCTTCGAAAAGCTCCAGAAGGCCATGCAGCGCATCGCTGGCGAACGTCTGCTGGCTGCGGCCTGA
PROTEIN sequence
Length: 329
VLPSGRPSGVRKISVDTVKGMGKVSNQKTGKTRALAVPALSGEQSLNRYLAEIKKFPVLTPEQEYMLAKRYQEHEDSEAAAQLVTSHLRLVAKIAMGYRGYGLPLADLISEGNVGLMQGVKKFEADRGFRLATYAMWWIKASMQEFILRSWSLVKIGTTAAQKKLFFNLRRMKRNLDAYEDSDLRPEDVAKIAHDLGVAEQEVINMNRRMMMGGDASLNVSMRNDEEGSGQWQDFLADDTPLQDEQVAEAEEAKLRHEMLTEAMDSLNDREKHILTERRLVENPRTLEELSQEYDVSRERIRQIEVRAFEKLQKAMQRIAGERLLAAA*