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SCNpilot_expt_500_bf_scaffold_1241_curated_22

Organism: scnpilot_dereplicated_Sphingopyxis_1

near complete RP 50 / 55 BSCG 49 / 51 ASCG 10 / 38
Location: 25366..25887

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9USD5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 98.3
  • Coverage: 174.0
  • Bit_score: 335
  • Evalue 3.80e-89
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENY81204.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.3
  • Coverage: 174.0
  • Bit_score: 335
  • Evalue 5.30e-89
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 162.0
  • Bit_score: 150
  • Evalue 4.20e-34

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 522
GTGACCGGAAAGGCGCAAGACAGGCTGTTCGAAGAGGCGATCGACCGCTTCGGCGGCGCTATCGCCCGCATGGCACGCGGCTATGAAGCCGATCCCGAACTGCAACGCGACCTTCTCCAGGAGTTGCAGGTTGCGCTTTGGCAGAGCTTCGCCCGCTTCGATGCCCGCTGTGCGATGAGCACCTGGGTCTGGCGCGTGGTGCATAATCGCGCCGCCTCGCACGTCGCCCAAGCCCGCAAGCGCCGGCGGCCGTGGGTCGATATCGAGGATCTGGCGCTTGCCGATGAAGCCCCCTCGCCCGCCGAGCGCGCCGAGACCGATCAGGCGCTCGCCTTGATGCTGGCGATCATCGACCGGCTCGGACCGCCCGACCGGCAGATATTGCTCCTTTATCTTGAGGGGATGCCAGCGGCCGAAATCGCCGACGTCACGGGCGTGTCGTCCGAGGCCGTCGCGACCAAGGTCCATCGCTTCAAATCCATGCTCACGCGCCGTTTCGCCGGCCTGGGAGATGCAACATGA
PROTEIN sequence
Length: 174
VTGKAQDRLFEEAIDRFGGAIARMARGYEADPELQRDLLQELQVALWQSFARFDARCAMSTWVWRVVHNRAASHVAQARKRRRPWVDIEDLALADEAPSPAERAETDQALALMLAIIDRLGPPDRQILLLYLEGMPAAEIADVTGVSSEAVATKVHRFKSMLTRRFAGLGDAT*