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SCNpilot_cont_300_bf_scaffold_380_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_380_curated_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..85)
DNA (84bp) protein (28aa)
Transcriptional regulator, AraC family n=12 Tax=pseudomallei group RepID=A1V8L1_BURMS
AraC family transcriptional regulator
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIO87684.1}; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei (Pseudomonas pseudomallei).;"
SCNpilot_cont_300_bf_scaffold_380_curated_2
unknown

Not on your lists

comp(237..1220)
DNA (984bp) protein (328aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_380_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1381..2721)
DNA (1341bp) protein (447aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K3J9_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL67838.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
general substrate transporter; K03288 MFS transporter, MHS family, citrate/tricarballylate:H+ symporter
SCNpilot_cont_300_bf_scaffold_380_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2806..3411)
DNA (606bp) protein (202aa)
methyltransferase (EC:2.1.1.-)
SAM-dependent methyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003770211
Uncharacterized protein {ECO:0000313|EMBL:EJL67839.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_380_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3429..4121)
DNA (693bp) protein (231aa)
Peroxiredoxin n=1 Tax=Variovorax sp. CF313 RepID=J2JIV8_9BURK
Peroxiredoxin {ECO:0000313|EMBL:EJL67840.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative alkyl hydroperoxide reductase/thiol-specific antioxidant
SCNpilot_cont_300_bf_scaffold_380_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4219..6393)
DNA (2175bp) protein (725aa)
protein-disulfide reductase (EC:1.8.1.8)
Thiol:disulfide interchange protein n=1 Tax=Variovorax sp. CF313 RepID=J3CAZ4_9BURK
Thiol:disulfide interchange protein {ECO:0000313|EMBL:EJL67841.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_380_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6494..7267)
DNA (774bp) protein (258aa)
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQM0_9BURK
Putative metal-dependent hydrolase related to alanyl-tRNA synthetase HxxxH domain containing protein {ECO:0000313|EMBL:EJL67842.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
alanyL-tRNA synthetase, class iic-like protein; K07050
SCNpilot_cont_300_bf_scaffold_380_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7399..8772
DNA (1374bp) protein (458aa)
Glucose/sorbosone dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2K3K4_9BURK
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:EJL67843.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
L-sorbosone dehydrogenase
SCNpilot_cont_300_bf_scaffold_380_curated_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8789..9829)
DNA (1041bp) protein (347aa)
LacI family transcription regulator n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RKT0_COMTE
LacI family transcriptional regulator {ECO:0000313|EMBL:KGH29070.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
LacI family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_380_curated_10
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9978..11318
DNA (1341bp) protein (447aa)
nucleobase:cation symporter n=1 Tax=Rhizobium meliloti RepID=UPI0002E1F9B0
Nucleobase:cation symporter {ECO:0000313|EMBL:KAK49318.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
xanthine/uracil/vitamin C permease
SCNpilot_cont_300_bf_scaffold_380_curated_11
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11371..12798
DNA (1428bp) protein (476aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. CIP 64.2 RepID=N9N3A0_9GAMM
S-adenosylhomocysteine deaminase {ECO:0000313|EMBL:EWY41787.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
cytosine deaminase rbh
SCNpilot_cont_300_bf_scaffold_380_curated_12
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12795..13508
DNA (714bp) protein (238aa)
Uncharacterized protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F7I3_SACEN
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:CAM00007.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
SCNpilot_cont_300_bf_scaffold_380_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13500..14108)
DNA (609bp) protein (203aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Variovorax sp. CF313 RepID=J3CAV0_9BURK
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:EJL67844.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferaser
SCNpilot_cont_300_bf_scaffold_380_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14153..14578
DNA (426bp) protein (142aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2JIW5_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL67845.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
marR family protein
SCNpilot_cont_300_bf_scaffold_380_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14584..16353
DNA (1770bp) protein (590aa)
Chloride channel protein EriC n=1 Tax=Variovorax sp. CF313 RepID=J3CAZ6_9BURK
Chloride channel protein EriC {ECO:0000313|EMBL:EJL67846.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Chloride channel core
SCNpilot_cont_300_bf_scaffold_380_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16355..17365)
DNA (1011bp) protein (337aa)
Zinc-binding alcohol dehydrogenase family protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQM4_9BURK
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:EJL67847.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
zinc-binding alcohol dehydrogenase family protein
SCNpilot_cont_300_bf_scaffold_380_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17451..18359
DNA (909bp) protein (303aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2K3K9_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL67848.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_380_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18452..19249)
DNA (798bp) protein (266aa)
3-oxoacyl-ACP reductase n=1 Tax=Variovorax paradoxus RepID=UPI000367CE58
putative oxidoreductase, SDR family
Putative oxidoreductase, SDR family {ECO:0000313|EMBL:AGU47911.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_380_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19358..19942)
DNA (585bp) protein (195aa)
Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD n=1 Tax=Variovorax sp. CF313 RepID=J2JIW7_9BURK
Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD {ECO:0000313|EMBL:EJL67850.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
PgdA-like protein
SCNpilot_cont_300_bf_scaffold_380_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19932..21209)
DNA (1278bp) protein (426aa)
pgaC; poly-beta-1,6-N-acetyl-D-glucosamine synthase PgaC (EC:2.4.1.-)
N-glycosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00037A1838
Poly-beta-1,6 N-acetyl-D-glucosamine synthase {ECO:0000313|EMBL:EJL67851.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_380_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21206..23275)
DNA (2070bp) protein (690aa)
pgaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB (EC:3.5.1.-)
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB n=1 Tax=Variovorax sp. CF313 RepID=J2SQM8_9BURK
Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB {ECO:0000313|EMBL:EJL67852.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_380_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23275..25680)
DNA (2406bp) protein (802aa)
Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA n=1 Tax=Variovorax sp. CF313 RepID=J2K3L6_9BURK
Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA {ECO:0000313|EMBL:EJL67853.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative poly-beta-1,6-N-acetyl-D-glucosamine export porin PgaA
SCNpilot_cont_300_bf_scaffold_380_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26169..26999
DNA (831bp) protein (277aa)
creatininase; K01470 creatinine amidohydrolase [EC:3.5.2.10]
creatininase n=1 Tax=Variovorax paradoxus RepID=UPI0003784D59
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29624.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_380_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27013..27984)
DNA (972bp) protein (324aa)
pyridoxaL-5'-phosphate-dependent protein beta subunit; K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2JIX6_9BURK
Threonine dehydratase {ECO:0000313|EMBL:EJL67860.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_380_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28006..28638)
DNA (633bp) protein (211aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V8J4_VARPE
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29622.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
lysine exporter protein LysE/YggA
SCNpilot_cont_300_bf_scaffold_380_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28644..29336)
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SQN8_9BURK
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29621.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_380_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29352..30284)
DNA (933bp) protein (311aa)
Phenazine biosynthesis protein PhzF family n=1 Tax=Variovorax sp. CF313 RepID=J2K3M6_9BURK
Phenazine biosynthesis protein PhzF family {ECO:0000313|EMBL:EJL67863.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phenazine biosynthesis protein phzf family; K06998
SCNpilot_cont_300_bf_scaffold_380_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30281..30922)
DNA (642bp) protein (214aa)
glutathione S-transferase n=1 Tax=Variovorax paradoxus RepID=UPI00037ED6A5
Variovorax paradoxus strain MEDvA23 contig_44, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29619.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutathione s-transferase domain-containing protein
SCNpilot_cont_300_bf_scaffold_380_curated_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30973..31809)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000371C8B8
Phenazine biosynthesis family protein {ECO:0000313|EMBL:CDX61045.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
phenazine biosynthesis family protein
SCNpilot_cont_300_bf_scaffold_380_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31820..32458)
DNA (639bp) protein (213aa)
Putative threonine efflux protein n=1 Tax=Variovorax sp. CF313 RepID=J2JIY0_9BURK
Putative threonine efflux protein {ECO:0000313|EMBL:EJL67865.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
lysine exporter protein LysE/YggA
Displaying items 1-30 of 52 in total

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