ggKbase home page

SCNpilot_expt_1000_bf_scaffold_16772_curated_4

Organism: scnpilot_dereplicated_Alphaproteobacteria_4

partial RP 35 / 55 BSCG 32 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: 2224..3057

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.3
  • Coverage: 231.0
  • Bit_score: 257
  • Evalue 2.90e-65
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] similarity KEGG
DB: KEGG
  • Identity: 54.3
  • Coverage: 230.0
  • Bit_score: 248
  • Evalue 3.10e-63
Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU2_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 230.0
  • Bit_score: 248
  • Evalue 9.70e-63

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

alpha proteobacterium MA2 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 834
ATGGACAAGCAGGTGATCGTACTGGACAAGCCGCCCGGCCTGGCGACGCAGGGCGGCTCCGGCCTGACCCGCCATGTGGATGGGATGCTGGACAGCCTGCAATATGAAAAGCCTACCCGGCCCAAGCTGGTGCACCGGCTGGACCGTGACACCTCCGGCGTGCTGCTGGTGGCGCGCACCGCCCAGGCCGCGTCGGGCCTGTCGGCCAGCCTGGCCCTGCGCGATACCTCCAAGGTCTATTGGGCGCTGACCCGCGGTGTGCCCAGGCAGAAGCACGGCGTCATCAAGGCGGCGCTGGCCAAGGAAGGCGGCCATGGCCCGCGCGGCCGCGACGAGCGCATGGCCGTCAGCGAGGATGACGAGGCCAAGGCGGCGCTGACCGAATATGCCGTGATGGGCACGGCGGGCACCGAATTCGCCTGGGTGGCGGCGCGGCCGATCACCGGGCGCACCCATCAGATCCGCGTCCATCTCGCCAGCATCGGCACGCCCATCGTGGGCGATTTCAAGTATGGCGGCACCGATGCGCGGGCGCGCGGCGACATCGCCGACAAGCTGCCCCTGCATGCCCGCAGCACCGATATCGGCCGCCCCGACGGCGGGCGCCTGCAGGCCACCGCGCCGTTGCCGCCGCACATGCTGAAAAGCTGGCGGACGCTGGGCTTTAATCCCGACGACCGCCGCAATCCCTTTCCGCCGAAAAAGCACGAACTGAAAAAGGCCGCGCGGCTTGAAGAAGCGCGCCGGGATCCGCCCGCCCGCAAGAAGCCCGCGGTCCAGCAGCACAAGAAGAAATCCACCAGCGTCGGCCACAAGCGAAAATCCAAAAAATGA
PROTEIN sequence
Length: 278
MDKQVIVLDKPPGLATQGGSGLTRHVDGMLDSLQYEKPTRPKLVHRLDRDTSGVLLVARTAQAASGLSASLALRDTSKVYWALTRGVPRQKHGVIKAALAKEGGHGPRGRDERMAVSEDDEAKAALTEYAVMGTAGTEFAWVAARPITGRTHQIRVHLASIGTPIVGDFKYGGTDARARGDIADKLPLHARSTDIGRPDGGRLQATAPLPPHMLKSWRTLGFNPDDRRNPFPPKKHELKKAARLEEARRDPPARKKPAVQQHKKKSTSVGHKRKSKK*