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SCNpilot_expt_1000_bf_scaffold_16772_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_16772_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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380..1549
DNA (1170bp) protein (390aa)
recombination factor protein RarA; K07478 putative ATPase rbh
AAA ATPase central domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU0_PARL1 rbh
AAA ATPase central domain protein {ECO:0000313|EMBL:ABS64373.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_16772_curated_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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1546..1929
DNA (384bp) protein (128aa)
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=CRCB_RHOCS
SCNpilot_expt_1000_bf_scaffold_16772_curated_3
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1922..2239
DNA (318bp) protein (106aa)
pseudouridine synthase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B68FBD
rluC; 23S rRNA pseudouridylate synthase
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_expt_1000_bf_scaffold_16772_curated_4
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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2224..3057
DNA (834bp) protein (278aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
RluA family pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24]
Pseudouridine synthase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWU2_PARL1
SCNpilot_expt_1000_bf_scaffold_16772_curated_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3054..3746
DNA (693bp) protein (231aa)
chaperone required for the assembly of the mitochondrial F1-ATPase
Chaperone required for the assembly of the mitochondrial F1-ATPase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NWH4_AZOS1
Chaperone required for the assembly of the mitochondrial F1-ATPase {ECO:0000313|EMBL:BAI72753.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_16772_curated_6
R_Burkholderiales_57_36, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3749..4084
DNA (336bp) protein (112aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADB5_9PROT
Tax=RIFCSPLOWO2_02_FULL_Burkholderiales_57_36_curated
SCNpilot_expt_1000_bf_scaffold_16772_curated_7
unknown

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comp(4045..4251)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16772_curated_8
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4759..5436)
DNA (678bp) protein (226aa)
Transmembrane protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NZ47_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDB03309.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_16772_curated_9
unknown

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6602..6904
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_16772_curated_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6931..7218
DNA (288bp) protein (96aa)
acyP; acylphosphatase
Acylphosphatase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNU6_TISMK
Acylphosphatase {ECO:0000313|EMBL:AFK54434.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_16772_curated_11
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7215..7376)
DNA (162bp) protein (54aa)
lipB; lipoate-protein ligase B; K03801 lipoyl(octanoyl) transferase [EC:2.3.1.181]
lipoate-protein ligase B n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000370B980
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" so
SCNpilot_expt_1000_bf_scaffold_16772_curated_12
unknown

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7931..8002
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 12 items

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