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SCNpilot_expt_1000_bf_scaffold_5077_curated_12

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 12306..13067

Top 3 Functional Annotations

Value Algorithm Source
ropA; putative outer membrane protein y4fJ similarity KEGG
DB: KEGG
  • Identity: 54.5
  • Coverage: 255.0
  • Bit_score: 280
  • Evalue 6.60e-73
RopA protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2X5_RHIFH similarity UNIREF
DB: UNIREF100
  • Identity: 54.5
  • Coverage: 255.0
  • Bit_score: 280
  • Evalue 2.10e-72
RopA protein {ECO:0000313|EMBL:CCE95249.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.5
  • Coverage: 255.0
  • Bit_score: 280
  • Evalue 3.00e-72

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Taxonomy

Sinorhizobium fredii → Sinorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 762
GTGAACTTTGACGCCCGTACGGATACCGAGCTCGGTACGCTGCGTAGCTATATCAATCTCGAACTTCGCGGTGACGACTCGAGCTTTGACGGCTACTCCGTTATCGATGAAGCGTTTATCGAGCTCGGCGGCTTCAAGGTCGGTAAGTTCTACAGCTGGTGGGATAGCGGTATCAACGGCGAAACCGATTCTCTCGGCAATGAAACCAACTTCAACTCGATCGCCTACACCTACGACGGTGGTACGTGGCGTGCAGGTCTCTCCATTGATGAACTCGAAAACACCGATCCGGTCGACTTGGGCCTTCATCACGACATCGGTGTTGCCGGTACCGTTGGCTTCTCCATTGGTGGTGTAAACCTCGACGTTCTCGGNNNNNNNNNNNNNNNNNNNNNAGAAGGCGCAATCCGTGCTATTCTGTCGGTAGACGTCGGTCCGGGCGCTCTGCAGGTTGCCGGTATCTGGGCTTCCGACCCGAACGCTTACTGGGCGGCTTCCGAATGGACCGTTGCCGCCTCCTATGCCTTCAAGGCAACGGAAAAGCTGACGATCACCCCGGCTGTTCAGTACTTTGATAACCTGAACCTCCTTGGTGGTGGCTTCATCGACGATACCCACCAGTGGCGCGTTGGTGCTACGGTTGGCTACGAAGTCGTCAGCGGTCTGAACGTTCTCGCGACGGCTGACTGGAACAAGATCGACACGCCGGTTGGCAACGACGACTTCGTTCGCGGCTTCCTCCGCCTGCAGCGCAACTTCTAA
PROTEIN sequence
Length: 254
VNFDARTDTELGTLRSYINLELRGDDSSFDGYSVIDEAFIELGGFKVGKFYSWWDSGINGETDSLGNETNFNSIAYTYDGGTWRAGLSIDELENTDPVDLGLHHDIGVAGTVGFSIGGVNLDVLXXXXXXXXEGAIRAILSVDVGPGALQVAGIWASDPNAYWAASEWTVAASYAFKATEKLTITPAVQYFDNLNLLGGGFIDDTHQWRVGATVGYEVVSGLNVLATADWNKIDTPVGNDDFVRGFLRLQRNF*