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SCNpilot_expt_1000_bf_scaffold_5077_curated

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5077_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1214)
DNA (1212bp) protein (404aa)
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EW49_9RHIZ rbh
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD {ECO:0000313|EMBL:EYR84223.1}; EC=3.7.1.n2 {ECO:0000313|EMBL:EYR84223.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
iolD; malonate semialdehyde dehydrogenase; K03336 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase [EC:3.7.1.-] rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1384..3309)
DNA (1926bp) protein (642aa)
5-dehydro-2-deoxygluconokinase IolC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CES3_9RHIZ rbh
5-dehydro-2-deoxygluconokinase IolC {ECO:0000313|EMBL:EYR84224.1}; EC=2.7.1.92 {ECO:0000313|EMBL:EYR84224.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar kinase IolC-like protein rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3414..4286)
DNA (873bp) protein (291aa)
Transcriptional regulator, RpiR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUQ7_9RHIZ rbh
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EYR84225.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4475..5596
DNA (1122bp) protein (374aa)
Putative dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3Q5_9RHIZ rbh
Putative dehydrogenase {ECO:0000313|EMBL:EYR84226.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dehydrogenase/oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5618..6073)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F50B77
AraC family transcriptional regulator {ECO:0000313|EMBL:KFL25961.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
glxA; AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5077_curated_6
unknown

Not on your lists

comp(6628..6840)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5077_curated_7
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7084..7803
DNA (720bp) protein (240aa)
ThiJ/PfpI rbh
ThiJ/PfpI n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11E59_MESSB rbh
ThiJ/PfpI {ECO:0000313|EMBL:ABG64316.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_5077_curated_8
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7955..8320
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI0003758917
Uncharacterized protein {ECO:0000313|EMBL:KGJ07700.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5077_curated_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8416..8700
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00037F2615
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:EHK59335.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Antibiotic biosynthesis monooxygenase
SCNpilot_expt_1000_bf_scaffold_5077_curated_trna_1
unknown

Not on your lists

comp(8798..8884)
DNA (87bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_5077_curated_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9319..10233)
DNA (915bp) protein (305aa)
Phage integrase family protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PBQ6_9RHIZ rbh
Phage integrase family protein {ECO:0000313|EMBL:EKF58283.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
Putative integrase rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_11
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10377..11387)
DNA (1011bp) protein (337aa)
Membrane protein {ECO:0000313|EMBL:KJF71253.1}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
Outer membrane protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UBB2_RHIRD rbh
outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12306..13067
DNA (762bp) protein (254aa)
ropA; putative outer membrane protein y4fJ
RopA protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2X5_RHIFH
RopA protein {ECO:0000313|EMBL:CCE95249.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_5077_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13208..14080)
DNA (873bp) protein (291aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY53_9RHIZ rbh
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EYR84311.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
alpha/beta hydrolase fold protein rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14310..15584)
DNA (1275bp) protein (425aa)
Soluble lytic transglycosylase {ECO:0000313|EMBL:EYR84312.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036BE6B6 rbh
lytic transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_5077_curated_15
unknown

Not on your lists

15718..16086
DNA (369bp) protein (123aa)

This feature has no annotations

Displaying 16 items

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