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SCNpilot_expt_1000_bf_scaffold_1731_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(15742..17268)

Top 3 Functional Annotations

Value Algorithm Source
Putative ribose/galactose/methyl galactoside import ATP-binding protein 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CD88_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 96.5
  • Coverage: 508.0
  • Bit_score: 938
  • Evalue 2.20e-270
  • rbh
ABC-type sugar transport system ATPase component {ECO:0000313|EMBL:EYR80577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.5
  • Coverage: 508.0
  • Bit_score: 938
  • Evalue 3.10e-270
putative sugar uptake ABC transporter ATP-binding protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 508.0
  • Bit_score: 850
  • Evalue 2.50e-244
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1527
ATGAATCCGGACGCTGCCGACGGGGCTCCCGTCGTTCTTGCCGCGCGTCGCATCAGCAAGTCTTTCAGTGGCGTGCAGGTGCTGTTCAGCGTCAATTTCGAGCTTCGTGCCGGTGAGATCCATGCGCTCATGGGCGAGAACGGCGCCGGCAAGTCGACGCTGGTCAAGATCCTCTCCGGTTTCGAGCAGCCGACCTCCGGCGAGATCCTGCTGGACGGGCAGCCGGTGAAGCTGCCGCCGAACGGGCAGGCCGAGGCGCTCGGCATCGTCATCATCCATCAGGAATTCAACCTCGCTGAACATCTCACCGTCACCGAGAGCCTGTTCCTCGGGCGCGAGGTCACGCGCTACGGCGTGCTCGACCGCAAGTTCATGCGCGCCGAGACGCGACGCGTGCTCGACCAGCTCGGCTCCCATGTCGACGAGAACGCGCAGATCAGCTCGCTCTCGATCGCCGACAAGCAGATGGTGGAGATCGCGAAAGCCATCAGCCGCGATGCGCGCATCATCTTCATGGACGAGCCGACGGCCGTCCTCTCCCGCGAGGAGACCAACTACCTCTTCCGCCAGGTGCGCAAATTGCGCGAAAAGGGCACGTCCTTCGTCTTCGTTTCGCACAAGCTGGACGAGGTGATGGAACTCACCGACCGCGTCACGGTGCTGCGCGACGGGCAATGGGTGAAGACGGCGCCGACCAGCATTCTCGACGGCGAATCCATCGCCCAGCTCATGGTCGGCCGCGAGCTCTCCAGCCTCTATCCCGCCAAGCAGGAGCCGAGCGTCGACGAAGAGGTGACGCTGTCAGTCGAGGGGCTTTCCACGTATTATGTCAAGGATGCGAGCTTCGAGGTGCGCAAGGGCGAGATTCTCGGTTTTTCCGGCCTGATCGGCTCGGGCCGTACGGAGCTGATGGAGGCGGTCGCGGGGCTGCGGTCGCGTCCGGCCGGCGAGGTCAGGGTGCGCGGCGAGAGCGTGCCGGGCGGCGACGTCCATGCCGCCAACCGGGTCGGCATCGCCTATATGACCAAGGACCGCAAGCACAAGGGCCTGCTGCTGAACTCGCGCATGACGGCGAACCTTACGCTGCAATCGCTGGAGCAGCATGGCAAGTATGGCTATCTGAGCCCGAAGAGCGAGGCCGCCGCGCTGGAGCGCGCCCGCCGGCGCTTCGATATCCGCGTGCGCGACGGGCGCGTCGTCGCCGGGCGCATGTCGGGCGGCAACCAGCAGAAGCTGCTGCTTGCCAAGGTCATGGAAACCGAGCCCGACGTCATCATCATCGACGAGCCGACGCGCGGCATCGATGTCGGCACCAAGCAGCAGATCTACCATTTCATCTCGGCGCTCGCCCGCGACGGCAAGTCGATCGTCGTCGTCTCCTCGGAGATGCCGGAGATCATCGGCCTGTGCACGCGCGTCGCCGTCATGCGGGAAGGGCGGATCGTCGGCATTCTCGAAGGCGAGGAGATCTCCGAGCAGGAGATCATGCGCTATTCGGCGGGCCTGAAGAAAAAGACCGCGGCCTGA
PROTEIN sequence
Length: 509
MNPDAADGAPVVLAARRISKSFSGVQVLFSVNFELRAGEIHALMGENGAGKSTLVKILSGFEQPTSGEILLDGQPVKLPPNGQAEALGIVIIHQEFNLAEHLTVTESLFLGREVTRYGVLDRKFMRAETRRVLDQLGSHVDENAQISSLSIADKQMVEIAKAISRDARIIFMDEPTAVLSREETNYLFRQVRKLREKGTSFVFVSHKLDEVMELTDRVTVLRDGQWVKTAPTSILDGESIAQLMVGRELSSLYPAKQEPSVDEEVTLSVEGLSTYYVKDASFEVRKGEILGFSGLIGSGRTELMEAVAGLRSRPAGEVRVRGESVPGGDVHAANRVGIAYMTKDRKHKGLLLNSRMTANLTLQSLEQHGKYGYLSPKSEAAALERARRRFDIRVRDGRVVAGRMSGGNQQKLLLAKVMETEPDVIIIDEPTRGIDVGTKQQIYHFISALARDGKSIVVVSSEMPEIIGLCTRVAVMREGRIVGILEGEEISEQEIMRYSAGLKKKTAA*