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SCNpilot_expt_1000_bf_scaffold_5456_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(752..1891)

Top 3 Functional Annotations

Value Algorithm Source
Ribose ABC transporter {ECO:0000313|EMBL:KHQ49821.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.8
  • Coverage: 372.0
  • Bit_score: 615
  • Evalue 5.80e-173
ribose ABC transporter, substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 374.0
  • Bit_score: 559
  • Evalue 1.10e-156
  • rbh
Ribose ABC transporter, substrate-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXL4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 374.0
  • Bit_score: 559
  • Evalue 3.50e-156
  • rbh

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Taxonomy

Ponticoccus sp. UMTAT08 → Ponticoccus → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1140
ATGAAGATGAAATCCCTGGCTGCGGCGGTGTCCGTCGCGGCAATGATGACGGCTGCCAGCGCGCAGGCCGACGGGCTTGACACGCTGCCGGAGAATATCCGCAGCGTCTACAGCATGGTCGACAGCCAGATCCCGGTCGGCGCATCGCCGCTGGCGAACTTCAAGGCCAAGAAGGGCCCGCCGTGGAAGATCGGCTATGCCTCGACCTATGCCGGCAACACCTGGCAGGCCACGGCACTCGACGAGATCGTCAACAAGCTTGCCCCGGCAGCCAAGGAGGCCGGCCTCGTTTCGGAACTCGTCGTCACGCAGGCCGACTTCAAGGACGCGGTGCAGATCCAGCAGATGCGCCAGATGATCGACAACGATGTCGATGCGATCATCATCTGCTGCTCGAATGTCACGGCCTTCAACCCGACCATCGAATATGCCTGGTCTAAGGGCGTCGCGGTCTTCGCCTATTCCGGCTACACGACCTCGCCCTATTCGATCAACGTCGCCGCCAACCACATGCAGGGCGGCTTCGACATGGCCAAATGGCTGGCCGACGAGATGGGCGGCAAGGGCAATGTCGTCCTCGTCTCCGGCGTTCCCGGCACGGCCTCGTCTGACGCCTTCGATTCCGGCGCCAAGAAGGCGCTGGAGGACTATCCGGACATCAAGATCATCGGCGAAGTGGCCGGGAAGTGGACCGACCAGGTCGCCCAGACCGAGCTGCAGAAGTTCCTGGCGATCAACCCGGCCAAGGTCGATGGCATCCTGACCCAGGCGGCGCAGGAAAACGGCGTCCTGAACGCCATGCTGCAATCCGGCCGTCCGATGGTGCCGATCACGCTCGGCGGCGAGGCATCGGCCGCCTGCTACTGGCGCAAGAACCCGGATTGGATTTCCAAGTCCTTCCACATCTGGCCGCCGGCCCGCGAAATGGACCAGGTCTGGGATGTCATGCTGCGCACGCTGGGCGGCGAGGGTCCGAAGATTCAGTCGATGCTGCGGCCGGTGCTGCCCTACACGATCGAAGACGTGAAGGCGGCGCTGCCGGAAGACTGCGACCTCAACTCCACCGACTGGGTACAGCCGACGGCGGATGCCTGGTGGCCGAAGGATGTCGCCACGCAGTTCTTCGCCAACCCGAAGTAA
PROTEIN sequence
Length: 380
MKMKSLAAAVSVAAMMTAASAQADGLDTLPENIRSVYSMVDSQIPVGASPLANFKAKKGPPWKIGYASTYAGNTWQATALDEIVNKLAPAAKEAGLVSELVVTQADFKDAVQIQQMRQMIDNDVDAIIICCSNVTAFNPTIEYAWSKGVAVFAYSGYTTSPYSINVAANHMQGGFDMAKWLADEMGGKGNVVLVSGVPGTASSDAFDSGAKKALEDYPDIKIIGEVAGKWTDQVAQTELQKFLAINPAKVDGILTQAAQENGVLNAMLQSGRPMVPITLGGEASAACYWRKNPDWISKSFHIWPPAREMDQVWDVMLRTLGGEGPKIQSMLRPVLPYTIEDVKAALPEDCDLNSTDWVQPTADAWWPKDVATQFFANPK*