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SCNpilot_expt_1000_bf_scaffold_15370_curated_2

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(1074..2585)

Top 3 Functional Annotations

Value Algorithm Source
D-galactarate dehydratase GarD {ECO:0000313|EMBL:EYR81073.1}; EC=4.2.1.42 {ECO:0000313|EMBL:EYR81073.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 503.0
  • Bit_score: 940
  • Evalue 8.00e-271
UPI0003D06AF1 related cluster n=1 Tax=unknown RepID=UPI0003D06AF1 similarity UNIREF
DB: UNIREF100
  • Identity: 81.5
  • Coverage: 503.0
  • Bit_score: 848
  • Evalue 2.90e-243
  • rbh
galactarate dehydratase (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7] similarity KEGG
DB: KEGG
  • Identity: 79.5
  • Coverage: 503.0
  • Bit_score: 838
  • Evalue 1.30e-240
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1512
ATGGCCCGTTTCATCCAGCTTTCCGCCGCCGACAACATCGTCCTGGTGACCGACCCGTTCAATCCCGGCGACCGCGCGGGGCCCGTCGCGGCGACCGCGCGGATCCCGCGCGGCCACAAGATGGCGATCACGGCGATCGGCAGGGACCAGCCGGTCGTCAAGTACGGCCAGGTCATCGGCTTTGCGAAGGACGCCATCTCGCCCGGCGACTGGGTGCACGAGCATAATGTCTACGTCCACAGCTTCGAGCGGAACTACATGTTCGGCGAGGGACTGAAGGAGACGCCGGTGCTGCCGGAGGCCGAGCGCGCCACCTTCCTCGGCTACCGCCGCGCCAGCGGCAAGGCCGGCACGCGCAACTACGTGGCCGTGCTGACCTCGGTGAACTGTTCGGCGAGCGCCGCGCGCTTCATCGCGGAGGAGGTGAACAGGTCCGGCATCCTCGCCGACTATCCGAATGTCGACGGCGTCATCTCGCTGGTCCACGGCACGGGCTGCGGCCTCGATGTCAACGGCGAGGCCCATGACATGCTCAAGAAGACGCAATGGGGCTTTGCGACCAACCCGAATGTCGGCGGCGTGCTGATGGTCGGCCTCGGCTGCGAGGTGTTCCAGATCCCGCGCTGGATGAAGGCCTATGGCGTGGAGGAGACCACCACCTTCCGCACCCTGACGATCCAGGAAACGGGTGGCACGCGCAAGACGGTGGAGGCGGGCGTGAAGGCGATCGTCGACATGCTGCCGGCGGTGAACGCCCATACGCGCACCCCCGTCCCTGCCTCCGAGCTCGTCCTCGCCCTCCAGTGCGGCGGCTCGGACGGCTATTCGGGCATCACCGCCAATCCGGCGCTGGGCGCGGCCGTCGACCTTCTCGTCGCCCAGGGCGGCACCGCCATCCTGTCGGAGACGCCGGAAATCTACGGCGCCGAGCATCTCCTCACCCGCCGCGCCGAAAGCCGCGCGGTCGGCGAGAAGCTCGTCGAGCGCATCCGCTGGTGGGAGGACTACACCGCCCGCCACAACATGGAGATGAACAACAACCCCTCGCCCGGCAACAAGCTCGGCGGCCTCACGACGATCCTCGAAAAATCGCTCGGCGCGGCGGCCAAGGGCGGCTCGACGAACCTGCGCGCCGTCTTCGAATATGCCGACCCGGTGGACGCGTCGGGCCTCGTCTTCATGGACACGCCCGGCTACGACCCGGTCTCGGCGACCGGGCAGGTCGCGGGCGGCGCCAACATCCTGTGTTTCACCACCGGCCGGGGCTCGGCCTTCGGCTGCAAGCCGACGCCCTCCATCAAGCTCGCCTCCAATTCCCACATCTACGAGCAGATGCGCGAGGACATGGACATCGACTGCGGCGACGTGCTGGACGGCGTGTCGCTGGAGGACAAGGGCCGGCAGATCTTCGACCTCATCCTGAGGACCGCGTCGGGCGAGCGCACGAAATCCGAGCAACTCGGCTACGGCGACCTCGAATTCGTGCCCTGGAACATCGGCGCGACGATGTGA
PROTEIN sequence
Length: 504
MARFIQLSAADNIVLVTDPFNPGDRAGPVAATARIPRGHKMAITAIGRDQPVVKYGQVIGFAKDAISPGDWVHEHNVYVHSFERNYMFGEGLKETPVLPEAERATFLGYRRASGKAGTRNYVAVLTSVNCSASAARFIAEEVNRSGILADYPNVDGVISLVHGTGCGLDVNGEAHDMLKKTQWGFATNPNVGGVLMVGLGCEVFQIPRWMKAYGVEETTTFRTLTIQETGGTRKTVEAGVKAIVDMLPAVNAHTRTPVPASELVLALQCGGSDGYSGITANPALGAAVDLLVAQGGTAILSETPEIYGAEHLLTRRAESRAVGEKLVERIRWWEDYTARHNMEMNNNPSPGNKLGGLTTILEKSLGAAAKGGSTNLRAVFEYADPVDASGLVFMDTPGYDPVSATGQVAGGANILCFTTGRGSAFGCKPTPSIKLASNSHIYEQMREDMDIDCGDVLDGVSLEDKGRQIFDLILRTASGERTKSEQLGYGDLEFVPWNIGATM*