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SCNpilot_expt_1000_bf_scaffold_15370_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15370_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..562
DNA (561bp) protein (187aa)
Pyridoxal 4-dehydrogenase Pld n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5B6_9RHIZ
Pyridoxal 4-dehydrogenase Pld {ECO:0000313|EMBL:EYR81072.1}; EC=1.1.1.107 {ECO:0000313|EMBL:EYR81072.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fdh; D-threo-aldose 1-dehydrogenase
SCNpilot_expt_1000_bf_scaffold_15370_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1074..2585)
DNA (1512bp) protein (504aa)
D-galactarate dehydratase GarD {ECO:0000313|EMBL:EYR81073.1}; EC=4.2.1.42 {ECO:0000313|EMBL:EYR81073.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
UPI0003D06AF1 related cluster n=1 Tax=unknown RepID=UPI0003D06AF1 rbh
galactarate dehydratase (EC:4.2.1.42); K01685 altronate hydrolase [EC:4.2.1.7] rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2749..3078)
DNA (330bp) protein (110aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR81074.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T995_MESCW
SCNpilot_expt_1000_bf_scaffold_15370_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3110..3790)
DNA (681bp) protein (227aa)
Transcriptional regulator {ECO:0000313|EMBL:EYR81075.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
transcriptional regulator rbh
UPI0003CF26CA related cluster n=1 Tax=unknown RepID=UPI0003CF26CA rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3997..4827
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D8X4_9RHIZ rbh
Putative metal-dependent hydrolase {ECO:0000313|EMBL:EYR81076.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07046 rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5364..6626
DNA (1263bp) protein (421aa)
Putative ribose/galactose/methyl galactoside import ATP-binding protein 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D4J7_9RHIZ
Monosaccharide-transporting ATPase {ECO:0000256|SAAS:SAAS00041637}; EC=3.6.3.17 {ECO:0000256|SAAS:SAAS00041637};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsA; ribose ABC transporter ATPase; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
SCNpilot_expt_1000_bf_scaffold_15370_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6623..7621
DNA (999bp) protein (333aa)
ABC transporter, membrane spanning protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F097_9RHIZ rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:EYR81078.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsC; ribose ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7621..8586
DNA (966bp) protein (322aa)
ABC transporter, membrane spanning protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CK47_9RHIZ rbh
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:EYR81079.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rbsC; ribose ABC transporter permease; K02057 simple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8616..9554
DNA (939bp) protein (313aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D054_9RHIZ rbh
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:EYR81080.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
periplasmic binding protein/LacI transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9686..10195
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3D2_9RHIZ
NTP pyrophosphohydrolase {ECO:0000313|EMBL:EYR81473.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_15370_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10244..10846)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR83956.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
protein tyrosine phosphatase rbh
SCNpilot_expt_1000_bf_scaffold_15370_curated_12
unknown

Not on your lists

comp(10958..11074)
DNA (117bp) protein (39aa)
Signal transduction histidine kinase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C8M8_RHILT
SCNpilot_expt_1000_bf_scaffold_15370_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11175..11402
DNA (228bp) protein (76aa)
inositol monophosphatase n=1 Tax=Rhizobium giardinii RepID=UPI00036882EE
Fructose-1,6-bisphosphatase {ECO:0000313|EMBL:EYR81989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
inositol-phosphate phosphatase (EC:3.1.3.25); K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
SCNpilot_expt_1000_bf_scaffold_15370_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11773..12555
DNA (783bp) protein (261aa)
Putative phosphohydrolase {ECO:0000313|EMBL:EYR81995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E3416
metallophosphoesterase
Displaying 14 items

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