ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2774_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 4640..5437

Top 3 Functional Annotations

Value Algorithm Source
Response regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXZ7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.3
  • Coverage: 270.0
  • Bit_score: 455
  • Evalue 3.80e-125
  • rbh
Response regulator {ECO:0000313|EMBL:EYR82076.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.3
  • Coverage: 270.0
  • Bit_score: 455
  • Evalue 5.40e-125
LuxR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 67.0
  • Coverage: 270.0
  • Bit_score: 342
  • Evalue 8.70e-92
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 798
ATGCGGGTCGATTTCACGGCACTCTTCCGCACGCTCGCCGACTGGACGGACGCGACGGAACGCTCCGACGGGCAGGCGGGCGAAGCCTTGCTGGCGATGACGCGCGCGCTCGTGCGCTTCGACGACATGGTCATCTTCGCCTATCGCGACAAGGCCCGGCCGATCGACCTCTTCAGCACCTTCGATGCGGACGATTACCACGTCTTCGTGACGCTTTATCAGGTGGGGCCGTACCTGCTCGATCCGTTCTATCACACGGCGCGGGCGGGCCGGGCCGGCGTCTTCCGCATGCGGGAGCTCGCGCCGGACCGCTTCTTCTCCAGCGAATACTACCGCACCTATTATTCGCAGACGCGGCTTGCCGAGGAACTGGGCTTCTTCGTGCCGGTAGGCGACGGCGTCACGGTGGTCGTCTCGCTGATGCGGCGCGAGAAGACGGGGGTCTTCCCGGCCGCCGAATTCGCGCTGCTGGCGGATGCCGAGTCCTTCGTCGCCGCCTTCGTGCGGCAGGCCTGGAGCGGCCTTGCGGAACGCTTCGCGCTTGCGGGGCAGGGGCGCGGGCGGCGCAGCGAGCCGGTGAGCGCGGCGGACAAGGTCTGGCGCAAGCTCAACCTCACCGACCGCGAGGCCTCGATCATCGAACTGGTGCTGCAGGGGCATTCGTCGGAATCGATCGGGCTCAAGCTGAATATTTCGACGGGGACGGTGAAGGTCCATCGGCGGAACGTCTATCGCAAGCTGGGGATCTCGTCGCAGATCCAGTTGCTGTCGATCTATCTGAAGAGCCTGCAGGCGTAG
PROTEIN sequence
Length: 266
MRVDFTALFRTLADWTDATERSDGQAGEALLAMTRALVRFDDMVIFAYRDKARPIDLFSTFDADDYHVFVTLYQVGPYLLDPFYHTARAGRAGVFRMRELAPDRFFSSEYYRTYYSQTRLAEELGFFVPVGDGVTVVVSLMRREKTGVFPAAEFALLADAESFVAAFVRQAWSGLAERFALAGQGRGRRSEPVSAADKVWRKLNLTDREASIIELVLQGHSSESIGLKLNISTGTVKVHRRNVYRKLGISSQIQLLSIYLKSLQA*