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SCNpilot_expt_1000_bf_scaffold_2774_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6543..6668)

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C5Q2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.2
  • Coverage: 41.0
  • Bit_score: 77
  • Evalue 2.60e-12
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR82074.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR82074.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.2
  • Coverage: 41.0
  • Bit_score: 77
  • Evalue 3.70e-12
ABC transporter; K02052 putative spermidine/putrescine transport system ATP-binding protein similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 41.0
  • Bit_score: 71
  • Evalue 1.00e-10

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 126
ATGAATGTCGGCGGCAGCGTCATCTCCTTCGACATGTTCAACAGCCCCGGCCTCGTGCCGCCGGCCGTCGGCGAAACGGTGACGCTGCGCTTCACCGCCGGCGACCTCCTGGTCATCCACGACTGA
PROTEIN sequence
Length: 42
MNVGGSVISFDMFNSPGLVPPAVGETVTLRFTAGDLLVIHD*