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scnpilot_solids2_trim150_scaffold_5172_15

Organism: SCNPILOT_SOLID2_TRIM150_Actinobacteria_69_241

near complete RP 48 / 55 MC: 3 BSCG 47 / 51 MC: 1 ASCG 13 / 38
Location: 11833..12249

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.6
  • Coverage: 127.0
  • Bit_score: 148
  • Evalue 5.60e-33
tRNA pseudouridine synthase A (EC:5.4.99.12); K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] similarity KEGG
DB: KEGG
  • Identity: 63.3
  • Coverage: 128.0
  • Bit_score: 147
  • Evalue 2.80e-33
tRNA pseudouridine synthase A n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XCL6_NAKMY similarity UNIREF
DB: UNIREF100
  • Identity: 63.3
  • Coverage: 128.0
  • Bit_score: 147
  • Evalue 8.90e-33

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Taxonomy

Actinokineospora spheciospongiae → Actinokineospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 417
ATGTCGGCCGCCGCCGCGATGCTGCTCGGCCTGCACGATTTCGCCGCGTTCTGCAAGCCTCGCGAAGGCGCCACCACGATCCGGGAGCTGCAGCGACTCGATGTCGCGGCGGCCGACATGCCGATCGGAGACGGCCTGGACGTGACGATCGACGTCGCGGCGGACGCGTTCTGTCATTCGATGGTGCGCAGTCTGGTCGGCGCGCTCATCGCCGTGGGGGAGGGTCGAGCCACCGTCGGCCGGCCCGCGGCTCTGCTTGCCGCCCGGGAGCGCACCGCGGAGATCTCGGTGGCTCCGGCACGTGGACTGACCCTGGTCGCGGTCGACTACCCGGCGGACGGTGCTCTGGCCGATCGCGTTGCCGCCACCCGGGCGGTGCGCGACGATCCGTGCGACTGCGACCATCCCGACGGGTGA
PROTEIN sequence
Length: 139
MSAAAAMLLGLHDFAAFCKPREGATTIRELQRLDVAAADMPIGDGLDVTIDVAADAFCHSMVRSLVGALIAVGEGRATVGRPAALLAARERTAEISVAPARGLTLVAVDYPADGALADRVAATRAVRDDPCDCDHPDG*