ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %

Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38

Displaying items 251-300 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_24617 Species: Flavobacterium branchiophilum (50%)	2	1519 bp	41.87	4.34	95.19
scnpilot_solids1_trim150_scaffold_7489 Species: Fluviicola taffensis (50%)	2	3570 bp	44.62	5.21	93.95
scnpilot_solids1_trim150_scaffold_30913 Species: Chryseobacterium sp. CF314 (50%)	2	1288 bp	44.02	3.49	89.91
scnpilot_solids1_trim150_scaffold_17777 Species: Kordia algicida (50%)	2	1911 bp	44.37	3.45	87.76
scnpilot_solids1_trim150_scaffold_37434 Species: Flavobacterium beibuense (50%)	2	1121 bp	38.80	4.55	82.43
scnpilot_solids1_trim150_scaffold_36291 Species: R_Fluviicola_43_260 (50%)	2	1147 bp	49.26	3.92	96.77
scnpilot_solids1_trim150_scaffold_29372 Species: Flavobacterium enshiense (50%)	2	1337 bp	48.99	4.04	95.59
scnpilot_solids1_trim150_scaffold_42133 Species: uncultured Flavobacteriia bacterium (50%)	2	1027 bp	36.71	2.63	98.15
scnpilot_solids1_trim150_scaffold_42901 Species: Flavobacterium subsaxonicum (50%)	2	1013 bp	43.14	3.55	66.04
scnpilot_solids1_trim150_scaffold_27437 Species: Elizabethkingia meningoseptica (50%)	2	1404 bp	39.96	2.14	67.95
scnpilot_solids1_trim150_scaffold_27693 Species: Elizabethkingia meningoseptica (50%)	2	1395 bp	41.94	2.37	98.28
scnpilot_solids1_trim150_scaffold_37694 Species: Flavobacterium psychrophilum (100%)	2	1115 bp	35.52	1.88	94.17
scnpilot_solids1_trim150_scaffold_19814 Species: Fluviicola taffensis (50%)	2	1772 bp	40.63	2.62	90.74
scnpilot_solids1_trim150_scaffold_35159 Species: Flavobacterium johnsoniae (50%)	2	1174 bp	37.39	4.47	89.18
scnpilot_solids1_trim150_scaffold_42904 Species: Chryseobacterium formosense (50%)	2	1013 bp	36.92	2.96	95.66
scnpilot_solids1_trim150_scaffold_28968 Species: Epilithonimonas lactis (50%)	2	1350 bp	37.19	4.44	85.78
scnpilot_solids1_trim150_scaffold_37185 Species: Flavobacterium sp. AED (50%)	2	1127 bp	41.79	4.39	92.37
scnpilot_solids1_trim150_scaffold_38474 Species: R_Fluviicola_43_260 (50%)	2	1099 bp	39.40	3.82	98.54
scnpilot_solids1_trim150_scaffold_24371 Species: Fluviicola taffensis (50%)	2	1529 bp	37.74	3.34	92.02
scnpilot_solids1_trim150_scaffold_38987 Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1088 bp	38.60	4.00	100.09
scnpilot_solids1_trim150_scaffold_24116 Species: Chryseobacterium luteum (50%)	2	1541 bp	41.08	3.41	94.61
scnpilot_solids1_trim150_scaffold_36812 Species: Fluviicola taffensis (50%)	2	1136 bp	39.44	2.38	92.17
scnpilot_solids1_trim150_scaffold_32749 Species: Leeuwenhoekiella blandensis (50%)	2	1236 bp	39.32	4.25	100.00
scnpilot_solids1_trim150_scaffold_31845 Species: Flavobacterium sp. F52 (50%)	2	1261 bp	40.36	5.11	68.28
scnpilot_solids1_trim150_scaffold_22013 Species: Chryseobacterium sp. JM1 (50%)	2	1646 bp	44.59	3.74	101.52
scnpilot_solids1_trim150_scaffold_36301 Species: Tamlana sedimentorum (50%)	2	1147 bp	47.17	5.10	96.51
scnpilot_solids1_trim150_scaffold_42142 Species: R_Fluviicola_43_260 (100%)	2	1026 bp	38.21	3.22	99.71
scnpilot_solids1_trim150_scaffold_12046 Species: Fluviicola taffensis (50%)	2	2528 bp	37.10	3.56	95.41
scnpilot_solids1_trim150_scaffold_37704 Species: R_Fluviicola_43_260 (50%)	2	1115 bp	37.49	2.15	107.62
scnpilot_solids1_trim150_scaffold_26281 Species: Chryseobacterium luteum (50%)	2	1450 bp	36.90	3.10	86.69
scnpilot_solids1_trim150_scaffold_27196 Species: Epilithonimonas sp. FH1 (50%)	2	2228 bp	34.96	2.29	44.17
scnpilot_solids1_trim150_scaffold_28468 Species: Chryseobacterium oranimense (50%)	2	1367 bp	43.23	3.51	86.47
scnpilot_solids1_trim150_scaffold_27197 Species: Formosa agariphila (50%)	2	1414 bp	37.77	3.08	93.99
scnpilot_solids1_trim150_scaffold_20446 Species: Elizabethkingia miricola (50%)	2	1735 bp	38.85	4.32	56.71
scnpilot_solids1_trim150_scaffold_14694 Species: Imtechella halotolerans (50%)	2	2195 bp	44.51	3.49	99.23
scnpilot_solids1_trim150_scaffold_15446 Species: Joostella marina (50%)	2	2115 bp	39.72	3.76	95.60
scnpilot_solids1_trim150_scaffold_34991 Species: R_Fluviicola_43_260 (50%)	2	1179 bp	42.41	2.80	93.89
scnpilot_solids1_trim150_scaffold_22535 Species: Chryseobacterium sp. P1-3 (50%)	2	1619 bp	48.92	3.43	71.34
scnpilot_solids1_trim150_scaffold_41607 Species: R_Fluviicola_43_260 (100%)	2	1036 bp	41.70	2.75	95.56
scnpilot_solids1_trim150_scaffold_32760 Species: Gramella forsetii (50%)	2	1235 bp	37.17	3.64	59.03
scnpilot_solids1_trim150_scaffold_38488 Species: Bizionia argentinensis (50%)	2	1098 bp	37.52	2.73	84.43
scnpilot_solids1_trim150_scaffold_18240 Species: Chryseobacterium indologenes (50%)	2	1876 bp	37.79	4.40	94.51
scnpilot_solids1_trim150_scaffold_40385 Species: Riemerella anatipestifer (50%)	2	1059 bp	42.40	2.27	92.07
scnpilot_solids1_trim150_scaffold_37713 Species: Winogradskyella sp. PG-2 (50%)	2	1115 bp	43.14	2.96	97.67
scnpilot_solids1_trim150_scaffold_31345 Species: Flavobacterium sp. EM1321 (50%)	2	1276 bp	36.99	4.00	25.63
scnpilot_solids1_trim150_scaffold_17291 Species: Flavobacterium suncheonense (100%)	2	1950 bp	37.44	3.85	85.85
scnpilot_solids1_trim150_scaffold_34228 Species: Flavobacterium sp. CF136 (50%)	2	1197 bp	44.86	4.51	100.25
scnpilot_solids1_trim150_scaffold_35181 Species: Zhouia amylolytica (50%)	2	1174 bp	42.84	4.09	98.89
scnpilot_solids1_trim150_scaffold_24645 Species: Fluviicola taffensis (50%)	2	1517 bp	41.92	3.86	98.68
scnpilot_solids1_trim150_scaffold_22541 Species: R_Fluviicola_43_260 (50%)	2	1619 bp	37.92	3.52	90.61

Displaying items 251-300 of 814 in total

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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