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scnpilot_solids2_trim150_scaffold_1316

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_1316_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..903
DNA (903bp) protein (301aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIL90478.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIL90478.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetyl-CoA acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD7_9GAMM
acetyl-CoA acetyltransferase
scnpilot_solids2_trim150_scaffold_1316_2
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1046..1324
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89935.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein; K07334 proteic killer suppression protein
scnpilot_solids2_trim150_scaffold_1316_3
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1334..1633
DNA (300bp) protein (100aa)
Putative plasmid maintenance system antidote protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU3_9GAMM
Putative plasmid maintenance system antidote protein {ECO:0000313|EMBL:EIL89934.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
helix-hairpin-helix DNA-binding motif-containing protein
scnpilot_solids2_trim150_scaffold_1316_4
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1719..1979
DNA (261bp) protein (87aa)
Addiction module antidote protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD9_9GAMM
Addiction module antidote protein {ECO:0000313|EMBL:EIL90480.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
addiction module antidote protein
scnpilot_solids2_trim150_scaffold_1316_5
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2004..2864
DNA (861bp) protein (287aa)
Uncharacterized protein {ECO:0000313|EMBL:KJV35462.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids2_trim150_scaffold_1316_6
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2861..3445)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TFS5_BURPP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD20181.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
scnpilot_solids2_trim150_scaffold_1316_7
Burkholderia dolosa, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3552..4490
DNA (939bp) protein (313aa)
LysR family transcriptional regulator (EC:4.2.1.1) rbh
Transcriptional regulator n=1 Tax=Burkholderia dolosa AUO158 RepID=A2WC18_9BURK rbh
Bacterial regulatory helix-turn-helix, lysR family protein {ECO:0000313|EMBL:AJY11842.1}; Transcriptional regulator {ECO:0000313|EMBL:EAY69514.1}; TaxID=350701 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia dolosa AU0158.;"
scnpilot_solids2_trim150_scaffold_1316_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4543..5127)
DNA (585bp) protein (195aa)
hypothetical protein id=12493358 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids2_trim150_scaffold_1316_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5208..6146)
DNA (939bp) protein (313aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Cysteine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD3_9GAMM
scnpilot_solids2_trim150_scaffold_1316_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6223..7710)
DNA (1488bp) protein (496aa)
precorrin-2 dehydrogenase (EC:1.3.1.76 2.1.1.107)
Siroheme synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NG78_9GAMM
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1316_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7981..8976
DNA (996bp) protein (332aa)
Transcriptional regulator CysB-like protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVD5_9GAMM
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGG88647.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1316_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9097..11520
DNA (2424bp) protein (808aa)
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Z3_9GAMM rbh
Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster {ECO:0000313|EMBL:EIL95234.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lhr; ATP-dependent RNA helicase; K06877 DEAD/DEAH box helicase domain-containing protein
scnpilot_solids2_trim150_scaffold_1316_13
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11517..12395
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTA8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL90449.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative exonuclease; K07502 hypothetical protein
scnpilot_solids2_trim150_scaffold_1316_14
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12442..12960)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KZR0_FRAAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFC84571.1}; Flags: Precursor;; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
scnpilot_solids2_trim150_scaffold_1316_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13279..14328)
DNA (1050bp) protein (350aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W464_9GAMM
scnpilot_solids2_trim150_scaffold_1316_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14318..15364)
DNA (1047bp) protein (349aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W465_9GAMM
dihydroorotate dehydrogenase, subfamily 2
scnpilot_solids2_trim150_scaffold_1316_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15441..16211)
DNA (771bp) protein (257aa)
Putative short chain dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W467_9GAMM
Putative short chain dehydrogenase {ECO:0000313|EMBL:EIL94258.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
scnpilot_solids2_trim150_scaffold_1316_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16205..16510)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ6_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1316_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16605..17003)
DNA (399bp) protein (133aa)
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Dyella japonica RepID=UPI0002EC0F1C
Aldehyde dehydrogenase {ECO:0000313|EMBL:AHX12695.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
scnpilot_solids2_trim150_scaffold_1316_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17008..18000)
DNA (993bp) protein (331aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWQ7_9GAMM
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AGG89514.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1316_trna_1
unknown

Not on your lists

18225..18298
DNA (74bp)
transferRNA Arg
scnpilot_solids2_trim150_scaffold_1316_21
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18346..19905)
DNA (1560bp) protein (520aa)
UPF0061 protein UU7_04657 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W470_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids2_trim150_scaffold_1316_22
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20088..20675
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W472_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94263.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1316_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20699..21067
DNA (369bp) protein (123aa)
Putative Fe-S oxidoreductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WWR1_9GAMM
putative Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:AGG89519.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids2_trim150_scaffold_1316_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21111..21809)
DNA (699bp) protein (233aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
pseudouridine synthase family protein (EC:5.4.99.-)
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W474_9GAMM
scnpilot_solids2_trim150_scaffold_1316_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21806..22867)
DNA (1062bp) protein (354aa)
Ribosomal RNA small subunit methyltransferase C n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W475_9GAMM
Ribosomal RNA small subunit methyltransferase C {ECO:0000313|EMBL:EIL94266.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
16S RNA G1207 methylase RsmC
scnpilot_solids2_trim150_scaffold_1316_26
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22947..23750)
DNA (804bp) protein (268aa)
Virulence protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB1_9GAMM
Virulence protein {ECO:0000313|EMBL:EIL89052.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_1316_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23747..24985)
DNA (1239bp) protein (413aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3]
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VPB0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89051.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Displaying 28 items

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