ggKbase home page
Advanced Search
Search Help

solids_Flavobacteriales_1

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_39_1
In projects: SCNPILOT_SOLID_1_TRIM150  |  scnpilot_solids_dereplicated

Consensus taxonomy: Flavobacteriales  →  Flavobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Properties

Avg. coverage: 1.00 Longest contig: 8.95 Kbp Bin length: 1.31 Mbp GC content: 39.03 %
Contigs count: 814 Features count: 1669 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 13 / 55 BSCG 11 / 51 ASCG 2 / 38
Displaying items 1-50 of 814 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_2261_curated
Order: Flavobacteriales (81.82%)
11 8954 bp 42.71 1.00 95.15
scnpilot_solids1_trim150_scaffold_7481_curated
Genus: Sphingobacterium (50%)
8 3490 bp 41.38 1.00 93.61
scnpilot_solids1_trim150_scaffold_5109_curated
Order: Flavobacteriales (50%)
8 6075 bp 33.66 1.00 95.95
scnpilot_solids1_trim150_scaffold_3925_curated
Species: Chryseobacterium sp. JM1 (62.5%)
8 5782 bp 43.70 1.00 98.17
scnpilot_solids1_trim150_scaffold_3505_curated
Species: Elizabethkingia miricola (57.14%)
7 6225 bp 40.31 1.00 96.24
scnpilot_solids1_trim150_scaffold_3804_curated
Species: Chryseobacterium indologenes (71.43%)
7 5687 bp 37.37 1.00 87.99
scnpilot_solids1_trim150_scaffold_4510_curated
Order: Flavobacteriales (57.14%)
7 5094 bp 35.28 1.00 85.75
scnpilot_solids1_trim150_scaffold_7979_curated
Species: Elizabethkingia miricola (57.14%)
7 3394 bp 41.51 1.00 95.73
scnpilot_solids1_trim150_scaffold_5472_curated
Species: Fluviicola taffensis (50%)
6 4509 bp 36.93 1.00 88.42
scnpilot_solids1_trim150_scaffold_15130_curated
Order: Flavobacteriales (66.67%)
6 2144 bp 37.31 1.00 93.89
scnpilot_solids1_trim150_scaffold_6096_curated
Species: Flavobacterium beibuense (50%)
6 4152 bp 47.42 1.00 78.69
scnpilot_solids1_trim150_scaffold_11663_curated
Species: Chryseobacterium indologenes (66.67%)
6 2532 bp 33.93 1.00 91.47
scnpilot_solids1_trim150_scaffold_6128_curated
Order: Flavobacteriales (50%)
6 4138 bp 34.12 1.00 96.57
scnpilot_solids1_trim150_scaffold_5648_curated
Class: Flavobacteriia (60%)
5 4405 bp 34.91 1.00 93.98
scnpilot_solids1_trim150_scaffold_2996_curated
Species: Flavobacterium beibuense (60%)
5 7181 bp 44.45 1.00 78.75
scnpilot_solids1_trim150_scaffold_11789_curated
Order: Flavobacteriales (60%)
5 2576 bp 40.72 1.00 72.90
scnpilot_solids1_trim150_scaffold_6070_curated
Species: Flavobacterium beibuense (80%)
5 3880 bp 43.35 1.00 99.90
scnpilot_solids1_trim150_scaffold_10067_curated
Order: Flavobacteriales (60%)
5 2872 bp 39.59 1.00 83.77
scnpilot_solids1_trim150_scaffold_7315_curated
Genus: Flavobacterium (80%)
5 3633 bp 43.96 1.00 98.10
scnpilot_solids1_trim150_scaffold_4837_curated
Species: Chryseobacterium gleum (60%)
5 4911 bp 41.48 1.00 43.49
scnpilot_solids1_trim150_scaffold_15548_curated
Species: R_Fluviicola_43_260 (50%)
4 3987 bp 39.45 1.00 79.61
scnpilot_solids1_trim150_scaffold_8759_curated
Order: Flavobacteriales (50%)
4 2919 bp 37.20 1.00 93.32
scnpilot_solids1_trim150_scaffold_7215_curated
Genus: Chryseobacterium (75%)
4 3669 bp 38.78 1.00 96.16
scnpilot_solids1_trim150_scaffold_17961_curated
Order: Flavobacteriales (75%)
4 1894 bp 36.59 1.00 92.50
scnpilot_solids1_trim150_scaffold_5089_curated
Order: Sphingobacteriales (50%)
4 4757 bp 35.21 1.00 75.36
scnpilot_solids1_trim150_scaffold_17167_curated
Genus: Sphingobacterium (50%)
4 1755 bp 38.52 1.00 75.04
scnpilot_solids1_trim150_scaffold_7580_curated
Genus: Chryseobacterium (50%)
4 3533 bp 44.13 1.00 97.31
scnpilot_solids1_trim150_scaffold_41836_curated
Species: Fluviicola taffensis (50%)
4 1029 bp 39.36 1.00 76.68
scnpilot_solids1_trim150_scaffold_12104_curated
Species: R_Fluviicola_43_260 (50%)
4 2517 bp 40.01 1.00 92.61
scnpilot_solids1_trim150_scaffold_15447_curated
Species: Flavobacterium psychrophilum (50%)
4 1997 bp 39.11 1.00 93.74
scnpilot_solids1_trim150_scaffold_8672_curated
Order: Flavobacteriales (50%)
4 3202 bp 33.95 1.00 89.66
scnpilot_solids1_trim150_scaffold_31811_curated
Class: Flavobacteriia (50%)
4 1259 bp 37.49 1.00 84.83
scnpilot_solids1_trim150_scaffold_13872_curated
Species: Joostella marina (75%)
4 2031 bp 38.11 1.00 90.40
scnpilot_solids1_trim150_scaffold_14690_curated
Species: Fluviicola taffensis (50%)
4 2188 bp 43.01 1.00 101.05
scnpilot_solids1_trim150_scaffold_17001_curated
Species: Flavobacterium sp. EM1308 (50%)
4 1840 bp 41.30 1.00 89.35
scnpilot_solids1_trim150_scaffold_20441_curated
Order: Flavobacteriales (75%)
4 1732 bp 34.93 1.00 78.81
scnpilot_solids1_trim150_scaffold_7746_curated
Genus: Elizabethkingia (50%)
4 3319 bp 43.27 1.00 82.07
scnpilot_solids1_trim150_scaffold_14820_curated
Genus: Chryseobacterium (50%)
4 2046 bp 39.49 1.00 89.15
scnpilot_solids1_trim150_scaffold_25780_curated
Species: Chryseobacterium vrystaatense (50%)
4 1467 bp 36.61 1.00 66.87
scnpilot_solids1_trim150_scaffold_11908_curated
Order: Flavobacteriales (50%)
4 2545 bp 35.25 1.00 90.41
scnpilot_solids1_trim150_scaffold_12692_curated
Species: Epilithonimonas sp. FH1 (50%)
4 2238 bp 43.12 1.00 90.35
scnpilot_solids1_trim150_scaffold_39958_curated
Species: Fluviicola taffensis (75%)
4 1065 bp 36.43 1.00 94.08
scnpilot_solids1_trim150_scaffold_14178_curated
Genus: Flavobacterium (50%)
4 2249 bp 41.08 1.00 94.58
scnpilot_solids1_trim150_scaffold_27288_curated
Class: Flavobacteriia (50%)
4 1407 bp 35.25 1.00 83.58
scnpilot_solids1_trim150_scaffold_12582_curated
Species: Pedobacter sp. NL19 (50%)
4 3172 bp 30.67 1.00 82.85
scnpilot_solids1_trim150_scaffold_7720_curated
Class: Flavobacteriia (50%)
4 3488 bp 35.32 1.00 85.92
scnpilot_solids1_trim150_scaffold_13911_curated
Genus: Flavobacterium (50%)
4 2270 bp 43.00 1.00 102.55
scnpilot_solids1_trim150_scaffold_32594_curated
Genus: Flavobacterium (50%)
4 1174 bp 41.14 1.00 85.09
scnpilot_solids1_trim150_scaffold_19971_curated
Species: R_Fluviicola_43_260 (50%)
4 1760 bp 39.83 1.00 95.97
scnpilot_solids1_trim150_scaffold_6862_curated
Species: Elizabethkingia miricola (75%)
4 3810 bp 36.51 1.00 47.32
Displaying items 1-50 of 814 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.