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RAAC1_SR1_1

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Displaying items 91-120 of 1099 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RAAC1_SR1_1_88
BJP_IG2069_Syntrophobacterales_47_18, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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95326..95823
DNA (498bp) protein (166aa)
hypothetical protein alias=RAAC1_SR1_88,RAAC1_SR1_C00001G00088 id=982208 tax=RAAC1_SR1 species=Methanothermobacter thermautotrophicus genus=Methanothermobacter taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota organism_group=SR1
hypothetical protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=34)
RAAC1_SR1_1_89
ACD78, Gracilibacteria, Bacteria

Not on your lists

95924..96568
DNA (645bp) protein (215aa)
Oxidoreductase FAD/NAD(P)-binding domain-containing protein n=2 Tax=Burkholderia RepID=I5CXT1_9BURK (db=UNIREF evalue=1.4e-08 bit_score=65.9 identity=26.2 coverage=92.55813953488372)
Oxidoreductase FAD/NAD(P)-binding protein rbh
rubredoxin Tax=ACD78
Ferredoxin reductase-like, C-terminal NADP-linked domain (db=superfamily db_id=SSF52343 from=87 to=212 evalue=2.7e-19)
RAAC1_SR1_1_90
ACD80, SR1, Bacteria

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96601..98817
DNA (2217bp) protein (739aa)
cow:Calow_1674 (p)ppGpp synthetase I, spot/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5] Tax=ACD80
liv:LIV_1479 relA; putative (p)ppGpp synthetase; K00951 GTP pyrophosphokinase [EC:2.7.6.5] alias=RAAC1_SR1_90,RAAC1_SR1_C00001G00090 id=982213 tax=RAAC1_SR1 species=unknown genus=Listeria taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes organism_group=SR1
GTP pyrophosphokinase n=53 Tax=Listeria RepID=C8K046_LISMN (db=UNIREF evalue=2.0e-118 bit_score=432.6 identity=33.6 coverage=96.21109607577807)
hypothetical protein rbh
RAAC1_SR1_1_91
ACD80, SR1, Bacteria

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98845..99309
DNA (465bp) protein (155aa)
hypothetical protein rbh
transmembrane_regions 20..42 Tax=ACD80
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=58 to=80)
RAAC1_SR1_1_92
ACD80, SR1, Bacteria

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99506..101407
DNA (1902bp) protein (634aa)
aas:Aasi_0559 thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=ACD80
ttj:TTHA1875 thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] alias=RAAC1_SR1_92,RAAC1_SR1_C00001G00092 id=982218 tax=RAAC1_SR1 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi organism_group=SR1
Threonine--tRNA ligase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U1H7_9CHLR (db=UNIREF evalue=2.4e-141 bit_score=508.4 identity=44.7 coverage=94.95268138801262)
hypothetical protein rbh
RAAC1_SR1_1_93
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(101456..101782)
DNA (327bp) protein (109aa)
hypothetical protein
100959..101285 - ( gc_cont=0.309)
RAAC1_SR1_1_94
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

101915..102496
DNA (582bp) protein (194aa)
hypothetical protein rbh
coiled-coil (db=Coil db_id=coil from=24 to=47 evalue=NA)
coiled-coil (db=Coil db_id=coil from=98 to=119 evalue=NA)
coiled-coil (db=Coil db_id=coil from=133 to=154 evalue=NA)
RAAC1_SR1_1_95
ACD80, SR1, Bacteria

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102588..103229
DNA (642bp) protein (214aa)
Thymidylate synthase n=1 Tax=Clostridium sp. D5 RepID=F0Z3N7_9CLOT (db=UNIREF evalue=1.6e-36 bit_score=158.7 identity=39.9 coverage=90.65420560747664)
hypothetical protein Tax=ACD80
Thymidylate synthase rbh
UPF0029 (db=PatternScan db_id=PS00910 from=93 to=122 evalue=0.0 interpro_id=IPR020569 interpro_description=Uncharacterised protein family UPF0029, Impact, conserved site)
RAAC1_SR1_1_96
unknown

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comp(103407..104582)
DNA (1176bp) protein (392aa)
Multidrug transporter, putative n=1 Tax=Algoriphagus sp. PR1 RepID=A3I0S1_9BACT Tax=ACD2
major facilitator superfamily transporter; K08151 MFS transporter, DHA1 family, tetracycline resistance protein alias=RAAC1_SR1_96,RAAC1_SR1_C00001G00096 id=982229 tax=RAAC1_SR1 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi organism_group=SR1
hypothetical protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=265)
RAAC1_SR1_1_97
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

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comp(104610..105824)
DNA (1215bp) protein (405aa)
Efflux ABC transporter n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VR19_MEGEL (db=UNIREF evalue=8.3e-95 bit_score=353.2 identity=46.1 coverage=99.50617283950616)
antimicrobial peptide ABC transporter permease; K02004 putative ABC transport system permease protein Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
hypothetical protein rbh
med:MELS_0040 ABC transporter; K02004 putative ABC transport system permease protein alias=RAAC1_SR1_97,RAAC1_SR1_C00001G00097 id=982230 tax=RAAC1_SR1 species=Megasphaera elsdenii genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes organism_group=SR1
RAAC1_SR1_1_98
RIFOXYC2_FULL_PER-ii_58_32_curated, PER-ii, Bacteria

Not on your lists

comp(105848..106528)
DNA (681bp) protein (227aa)
ABC transporter related n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTE4_9FIRM (db=UNIREF evalue=1.5e-64 bit_score=251.9 identity=55.9 coverage=96.0352422907489)
ABC transporter-like protein; K02003 putative ABC transport system ATP-binding protein Tax=RIFOXYC2_FULL_PER-ii_58_32_curated
ABC transporter related protein rbh
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=222 evalue=5.5e-108)
RAAC1_SR1_1_99

Not on your lists

comp(106560..108410)
DNA (1851bp) protein (617aa)
Efflux transporter, RND family, MFP subunit (Fragment) n=1 Tax=sediment metagenome RepID=D9PI58_9ZZZZ (db=UNIREF evalue=3.9e-35 bit_score=155.6 identity=31.7 coverage=47.9740680713128)
Uncharacterized protein {ECO:0000313|EMBL:EKE26118.1}; Flags: Fragment;; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
Efflux transporter, RND family, MFP subunit rbh
coiled-coil (db=Coil db_id=coil from=333 to=368 evalue=NA)
RAAC1_SR1_1_100
ACD4, Gracilibacteria, Bacteria

Not on your lists

108550..109206
DNA (657bp) protein (219aa)
two-component system response regulator; K02483 two-component system, OmpR family, response regulator Tax=ACD4
transcriptional regulator alias=RAAC1_SR1_100,RAAC1_SR1_C00001G00100 id=982233 tax=RAAC1_SR1 species=unknown genus=Veillonella taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes organism_group=SR1
transcriptional regulator rbh
SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) (db=HMMPanther db_id=PTHR23283:SF47 from=2 to=120 evalue=6.7e-19)
RAAC1_SR1_1_101
ACD78, Gracilibacteria, Bacteria

Not on your lists

109229..110452
DNA (1224bp) protein (408aa)
Sensor histidine kinase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V235_9AQUI (db=UNIREF evalue=1.5e-35 bit_score=156.4 identity=33.7 coverage=64.70588235294117)
resE; signal transduction histidine kinase Tax=ACD78
Sensor histidine kinase rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=187)
RAAC1_SR1_1_102
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

110535..111014
DNA (480bp) protein (160aa)
hypothetical protein
seg (db=Seg db_id=seg from=6 to=21)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
RAAC1_SR1_1_103
ACD80, SR1, Bacteria

Not on your lists

comp(111075..111659)
DNA (585bp) protein (195aa)
rubrerythrin Tax=ACD80
rubrerythrin alias=RAAC1_SR1_103,RAAC1_SR1_C00001G00103 id=982236 tax=RAAC1_SR1 species=Archaeoglobus veneficus genus=Archaeoglobus taxon_order=Archaeoglobales taxon_class=Archaeoglobi phylum=Euryarchaeota organism_group=SR1
rubrerythrin rbh
no description (db=Gene3D db_id=G3DSA:1.20.1260.10 from=3 to=149 evalue=2.6e-36 interpro_id=IPR012347 interpro_description=Ferritin-related)
RAAC1_SR1_1_104
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(111693..111857)
DNA (165bp) protein (55aa)
hypothetical protein
seg (db=Seg db_id=seg from=13 to=25)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
RAAC1_SR1_1_105
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

112023..112436
DNA (414bp) protein (138aa)
hypothetical protein
seg (db=Seg db_id=seg from=86 to=93)
seg (db=Seg db_id=seg from=102 to=110)
RAAC1_SR1_1_106
unknown

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comp(112509..113591)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0L2_9BACE Tax=ACD80
Glycosyl transferase family 4 n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4EE44_9CHLR (db=UNIREF evalue=5.8e-23 bit_score=114.4 identity=26.8 coverage=91.13573407202216)
Glycosyl transferase family 4 rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
RAAC1_SR1_1_107
ACD4, Gracilibacteria, Bacteria

Not on your lists

113727..114866
DNA (1140bp) protein (380aa)
Putative GTP-binding protein ynbA n=1 Tax=Crassostrea gigas RepID=K1P0G2_CRAGI (db=UNIREF evalue=3.0e-70 bit_score=271.6 identity=39.9 coverage=97.63157894736842)
hflX; GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=ACD4
hypothetical protein rbh
seg (db=Seg db_id=seg from=365 to=379)
RAAC1_SR1_1_108
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

114902..115111
DNA (210bp) protein (70aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
PROKAR_LIPOPROTEIN (db=ProfileScan db_id=PS51257 from=1 to=34 evalue=5.0)
RAAC1_SR1_1_109
Microcystis aeruginosa, Microcystis, Chroococcales, Cyanobacteria, Bacteria

Not on your lists

115249..117693
DNA (2445bp) protein (815aa)
Uncharacterized protein n=1 Tax=Microcystis aeruginosa PCC 9809 RepID=I4HPC3_MICAE (db=UNIREF evalue=2.5e-26 bit_score=126.7 identity=30.5 coverage=32.39263803680982)
hypothetical protein rbh
coiled-coil (db=Coil db_id=coil from=331 to=352 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
RAAC1_SR1_1_110
Peregrinibacteria bacterium GW2011_GWA2_33_10, Peregrinibacteria, Bacteria

Not on your lists

comp(117747..118241)
DNA (495bp) protein (165aa)
Peptide deformylase n=2 Tax=Crocosphaera watsonii RepID=G5IZU6_CROWT (db=UNIREF evalue=1.3e-25 bit_score=122.1 identity=41.5 coverage=94.54545454545455)
Peptide deformylase {ECO:0000313|EMBL:KKP35682.1}; TaxID=1619054 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_33_10.;"
Peptide deformylase rbh
Peptide deformylase (db=superfamily db_id=SSF56420 from=1 to=164 evalue=1.5e-48 interpro_id=IPR023635 interpro_description=Peptide deformylase)
RAAC1_SR1_1_111
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

118679..119590
DNA (912bp) protein (304aa)
hypothetical protein rbh
transmembrane_regions (db=TMHMM db_id=tmhmm from=53 to=75)
seg (db=Seg db_id=seg from=256 to=272)
seg (db=Seg db_id=seg from=96 to=111)
RAAC1_SR1_1_T115
unknown

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118397..118483
DNA (87bp)
transferRNA
RAAC1_SR1_1_112
ACD80, SR1, Bacteria

Not on your lists

119739..122900
DNA (3162bp) protein (1054aa)
glycosyl transferase family 51; K05364 peptidoglycan glycosyltransferase [EC:2.4.1.129] Tax=ACD80
penicillin-binding protein 1A (EC:2.4.2.- 3.4.-.-); K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] alias=RAAC1_SR1_112,RAAC1_SR1_C00001G00112 id=982245 tax=RAAC1_SR1 species=Sulfurihydrogenibium azorense genus=Sulfurihydrogenibium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae organism_group=SR1
hypothetical protein rbh
seg (db=Seg db_id=seg from=152 to=162)
RAAC1_SR1_1_113
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

comp(122951..124528)
DNA (1578bp) protein (526aa)
hypothetical protein rbh
seg (db=Seg db_id=seg from=195 to=209)
seg (db=Seg db_id=seg from=231 to=241)
seg (db=Seg db_id=seg from=420 to=434)
RAAC1_SR1_1_R114
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

124874..127807
DNA (2934bp)
RAAC1_SR1_5S_rRNA
unknown

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127917..128033
DNA (117bp)
RAAC1_SR1_1_R115
RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, RAAC1_SR1, SR1, Bacteria

Not on your lists

128092..129563
DNA (1472bp)
Displaying items 91-120 of 1099 in total

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