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RifSed_csp2_16ft_3_scaffold_5857_12

Organism: RifSed_csp2_16ft_3_Methanoperedens_45_12

near complete RP 32 / 55 MC: 3 BSCG 28 / 51 ASCG 37 / 38 MC: 1
Location: 7529..7807

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit L {ECO:0000256|HAMAP-Rule:MF_00261}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00261};; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Candidatus Methanoperedenaceae; Candidatus Methanoperedens.;" source="Candidatus Methanoperedens nitroreducens.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.1
  • Coverage: 91.0
  • Bit_score: 151
  • Evalue 5.70e-34
UPI0003D1C250 related cluster Tax=unknown RepID=UPI0003D1C250 similarity UNIREF
DB: UNIREF100
  • Identity: 57.5
  • Coverage: 87.0
  • Bit_score: 112
  • Evalue 2.10e-22
RNA polymerase dimerization similarity KEGG
DB: KEGG
  • Identity: 56.8
  • Coverage: 88.0
  • Bit_score: 108
  • Evalue 8.60e-22

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Taxonomy

Candidatus Methanoperedens nitroreducens → Candidatus Methanoperedens → Methanosarcinales → Methanomicrobia → Euryarchaeota → Archaea

Sequences

DNA sequence
Length: 279
ATGGAACTTACAATTCTGAACAAGACGGATAATGAGATCAGCATAAAAGTAGCGGGAGAGACGCACACGCTACTGAATGCGCTAAAAGTAGCCCTGCTCGGCAGCAAGCACGTAGAGATTGCAACGTACGATATTAAACACCCCACGATCAGCGACCCTGTGCTGTTCGTGAGAACAGACGGCGCAGATCCAGTAAAAGTGATAAAAAAGGCGTCGGAAGATATTTTCAAAGAATGTGATGAATTTATTAAGCTTTTTAAGAAGAAGACAGTGGATTGA
PROTEIN sequence
Length: 93
MELTILNKTDNEISIKVAGETHTLLNALKVALLGSKHVEIATYDIKHPTISDPVLFVRTDGADPVKVIKKASEDIFKECDEFIKLFKKKTVD*