ggKbase | organisms

Consensus taxonomy: Nitrospirae → Bacteria

Metagenomic Context

Parent: BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5 Manually curated genome
Original version: BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5

Properties

Avg. coverage: 1.00 Longest contig: 7.75 Kbp Bin length: 1.27 Mbp GC content: 37.52 %

Contigs count: 672 Features count: 1509 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 29 / 55 MC: 2 BSCG 27 / 51 ASCG 7 / 38 MC: 1

Displaying items 301-350 of 672 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
bjp_ig3402_scaffold_17869 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	2354 bp	43.80	1.00	12.49
bjp_ig3402_scaffold_39595 Species: BJP_IG2158_Nitrospirales_45_240 (50%)	2	1208 bp	42.05	1.00	95.12
bjp_ig3402_scaffold_46978 Species: Coraliomargarita sp. CAG:312 (50%)	2	1154 bp	36.92	1.00	50.69
bjp_ig3402_scaffold_28092 Species: CG_Nitrosp_02 (50%)	2	1746 bp	37.34	1.00	71.82
bjp_ig3402_scaffold_22467 Species: Flexistipes sinusarabici (50%)	2	2126 bp	38.66	1.00	55.17
bjp_ig3402_scaffold_29949 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1648 bp	36.59	1.00	86.65
bjp_ig3402_scaffold_35927 Species: RLO_Sulfuricurvum_43_24 (50%)	2	1322 bp	34.19	1.00	49.02
bjp_ig3402_scaffold_33561 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1545 bp	37.15	1.00	76.89
bjp_ig3402_scaffold_31847 Species: Geobacter bemidjiensis (50%)	2	1201 bp	35.14	1.00	66.94
bjp_ig3402_scaffold_22627 Species: CG_Elusi_05 (50%)	2	2060 bp	38.74	1.00	76.60
bjp_ig3402_scaffold_18014 Species: RLO_Nitrospinae_39_15 (50%)	2	2548 bp	39.01	1.00	71.11
bjp_ig3402_scaffold_33810 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1373 bp	33.21	1.00	67.30
bjp_ig3402_scaffold_48054 Species: GWC2_Nitrospirae_42_7_curated (50%)	2	1131 bp	37.93	1.00	96.29
bjp_ig3402_scaffold_47634 Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)	2	1064 bp	35.81	1.00	35.24
bjp_ig3402_scaffold_35515 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1158 bp	34.72	1.00	54.40
bjp_ig3402_scaffold_25140 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1759 bp	37.92	1.00	69.41
bjp_ig3402_scaffold_34341 Species: RBG_13_Nitrospirae_43_8_curated (50%)	2	1505 bp	37.74	1.00	69.77
bjp_ig3402_scaffold_29010	2	1731 bp	42.17	1.00	82.50
bjp_ig3402_scaffold_48077 Species: Desulfobulbaceae bacterium BRH_c16a (50%)	2	1102 bp	42.74	1.00	98.82
bjp_ig3402_scaffold_24052	2	1306 bp	33.54	1.00	99.69
bjp_ig3402_scaffold_10050 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	4095 bp	32.06	1.00	33.41
bjp_ig3402_scaffold_16618 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	2700 bp	35.19	1.00	50.33
bjp_ig3402_scaffold_43143 Species: RBG_16_Nitrospirae_43_11_curated (50%)	2	1242 bp	46.62	1.00	85.02
bjp_ig3402_scaffold_41912 Species: CG_Nitrosp_01 (50%)	2	1274 bp	35.95	1.00	64.52
bjp_ig3402_scaffold_37345 Species: CG_Desulfob_01 (50%)	2	1381 bp	41.13	1.00	87.33
bjp_ig3402_scaffold_30407 Species: RBG_19FT_COMBO_Thermodesulfovibrio_42_12_curated (50%)	2	1415 bp	35.76	1.00	76.96
bjp_ig3402_scaffold_50499 Species: GWC2_Planctomycetes_49_10_curated (50%)	2	1084 bp	34.96	1.00	99.91
bjp_ig3402_scaffold_53203 Species: RBG_13_Nitrospirae_43_8_curated (50%)	2	1034 bp	43.23	1.00	100.10
bjp_ig3402_scaffold_25574 Species: CG_Syntroph_01 (50%)	2	2130 bp	38.64	1.00	59.44
bjp_ig3402_scaffold_45082 Species: CSP1_8_Deltaproteobacteria (50%)	2	1196 bp	40.30	1.00	47.66
bjp_ig3402_scaffold_32604 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1339 bp	32.79	1.00	58.92
bjp_ig3402_scaffold_24386 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	2038 bp	37.24	1.00	97.74
bjp_ig3402_scaffold_33119 Species: GWC2_Nitrospirae_42_7_curated (50%)	2	1168 bp	34.93	1.00	34.93
bjp_ig3402_scaffold_48865 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1072 bp	36.75	1.00	87.87
bjp_ig3402_scaffold_34828 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1467 bp	41.24	1.00	99.80
bjp_ig3402_scaffold_45343 Species: GWC2_Nitrospirae_57_13_curated (50%)	2	1091 bp	36.66	1.00	98.72
bjp_ig3402_scaffold_29961 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1685 bp	40.53	1.00	84.75
bjp_ig3402_scaffold_52361 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	1049 bp	41.18	1.00	103.81
bjp_ig3402_scaffold_27136 Species: GWB1_Spirochaetes_36_13_curated (50%)	2	1675 bp	33.61	1.00	87.04
bjp_ig3402_scaffold_31782 Species: Thermodesulfovibrio yellowstonii (50%)	2	1604 bp	36.85	1.00	91.65
bjp_ig3402_scaffold_42088 Species: BJP_IG2158_Nitrospirales_45_240 (50%)	2	1269 bp	36.80	1.00	59.34
bjp_ig3402_scaffold_37313 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1407 bp	27.15	1.00	36.46
bjp_ig3402_scaffold_13333	2	3101 bp	25.25	1.00	10.74
bjp_ig3402_scaffold_46811 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1157 bp	34.14	1.00	68.71
bjp_ig3402_scaffold_14491 Species: CSP1_6_Rokubacteria (50%)	2	3049 bp	41.36	1.00	95.24
bjp_ig3402_scaffold_18172 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	2493 bp	38.79	1.00	95.07
bjp_ig3402_scaffold_20249 Species: RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated (50%)	2	2314 bp	41.40	1.00	70.27
bjp_ig3402_scaffold_9711 Species: CG_CP01_01 (50%)	2	4257 bp	38.81	1.00	96.62
bjp_ig3402_scaffold_38332 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	1376 bp	36.56	1.00	94.40
bjp_ig3402_scaffold_19598 Species: GWB2_Nitrospirae_47_37_curated (100%)	2	2374 bp	38.88	1.00	98.06

Displaying items 301-350 of 672 in total

BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5_curated

09MI20_z3_2014_Nitrospirae_38_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

BJP_Ig3402_Miz_0z3_300_2014_Nitrospirae_40_5_curated

09MI20_z3_2014_Nitrospirae_38_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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