ggKbase home page

PLM4_32_b1_sep16_scaffold_8644_5

Organism: PLM4_32_b1_sep16_Acidobacteria_64_8

near complete RP 45 / 55 MC: 4 BSCG 44 / 51 MC: 2 ASCG 11 / 38
Location: 5390..5974

Top 3 Functional Annotations

Value Algorithm Source
sigma-70 family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1? similarity UNIREF
DB: UNIREF100
  • Identity: 71.5
  • Coverage: 186.0
  • Bit_score: 274
  • Evalue 6.80e-71
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 51.3
  • Coverage: 191.0
  • Bit_score: 182
  • Evalue 9.90e-44
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 94.7
  • Coverage: 189.0
  • Bit_score: 359
  • Evalue 2.20e-96

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated → Acidobacteria → Bacteria

Sequences

DNA sequence
Length: 585
ATGGTTGCGACCGACGAAGAGCTCGTCGCCAGGTCCATGGATGGCGACGTTGATAGCTTCAACCAGCTGGTTTTGCGCTGGGAACGGCCGATCTACGCCTTGGCGTACCGGGTGATAGGCCGGGACGAGGACGCGCGGGACGTCGCCCAGGAAACCTTCCTCCGGGCCTTTCGGGCACTCCCTGGCTTCAAGGGTCAGGCGAAGTTCTCATCCTGGCTCTACAGAATTGCGCTGAATCTCTGCCGGGACTGGATCCGGCGGAAAAAGCGCACGCCCGTCGTCGACATGCCCGAGGGTGTCGACGTCATCGAGCTCGCCGCCGAGCAGGGACCGGTCGAATCGATCGAGGATCTGGTCGCGCGGCAGGAGATGAGCCGCATCGTGGCCCAGGGCATGAAGCTGCTGCCCGACGAGCAACGCACCGCGATTGTGTTGAAGGAGTATCACGGCCTGACGTTCCAGGAGATCGCCGACTTGCAAGGCTGCCCGTTGAGCACCGTGAAGACGCGCCTCTACCAGGGGCTCACGGTGTTGCGCCGTCACCTGGAGAGCCAGGGCATGACGAGTTACGAGAAGAGTGAATAA
PROTEIN sequence
Length: 195
MVATDEELVARSMDGDVDSFNQLVLRWERPIYALAYRVIGRDEDARDVAQETFLRAFRALPGFKGQAKFSSWLYRIALNLCRDWIRRKKRTPVVDMPEGVDVIELAAEQGPVESIEDLVARQEMSRIVAQGMKLLPDEQRTAIVLKEYHGLTFQEIADLQGCPLSTVKTRLYQGLTVLRRHLESQGMTSYEKSE*