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ERMGT100_2_curated_scaffold_9

Search features with annotation key words

Displaying items 61-90 of 221 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT100_2_curated_scaffold_9_61
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70618..71853)
-----------------
DNA (1236bp)
protein (412aa)
hypothetical protein id=12554228 bin=CNBR_ACIDO species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ABC transporter permease {ECO:0000313|EMBL:KGF82426.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
hypothetical protein
ERMGT100_2_curated_scaffold_9_62
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(71850..73094)
-----------------
DNA (1245bp)
protein (415aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI00036C7050
Uncharacterized protein {ECO:0000313|EMBL:EJF09390.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
ERMGT100_2_curated_scaffold_9_63
Porphyromonas sp. COT-108 OH1349, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(73102..73824)
-----------------
DNA (723bp)
protein (241aa)
ABC transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00036BCE4A
phosphonate-transporting ATPase
Macrolide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGN68544.1}; TaxID=1537504 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. COT-108 OH1349.;"
ERMGT100_2_curated_scaffold_9_64
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(73821..75065)
-----------------
DNA (1245bp)
protein (415aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein id=12554231 bin=CNBR_ACIDO species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:AHM63112.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
RND transporter
ERMGT100_2_curated_scaffold_9_65
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(75194..75796)
-----------------
DNA (603bp)
protein (201aa)
Tetratricopeptide repeat family n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 RepID=B4VK79_9CYAN
Tetratricopeptide TPR_2 repeat-containing protein
Tetratricopeptide repeat family {ECO:0000313|EMBL:EDX77727.1}; TaxID=118168 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Coleofasciculus.;" source="Coleofasciculus chthonoplastes PCC 7420.;"
ERMGT100_2_curated_scaffold_9_66
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(75906..77237)
-----------------
DNA (1332bp)
protein (444aa)
id=5223720 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_67
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(77234..78079)
-----------------
DNA (846bp)
protein (282aa)
alias=16ft_combo_ws3_scaffold_1406_17 id=24588000 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_68
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

78300..79124
-----------------
DNA (825bp)
protein (275aa)
alias=16ft_combo_ws3_scaffold_1406_18 id=24587999 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_69
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(79244..79723)
-----------------
DNA (480bp)
protein (160aa)
HNH nuclease n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IGI7_ANADE id=5223704 bin=16ft_combo_ws3_JS1 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
HNH endonuclease
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_70
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

80552..81385
-----------------
DNA (834bp)
protein (278aa)
endonuclease III (EC:4.2.99.18); K10773 endonuclease III [EC:4.2.99.18] id=24587998 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
endonuclease III (EC:4.2.99.18)
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_71
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

81388..83766
-----------------
DNA (2379bp)
protein (793aa)
Signal peptide peptidase SppA, 36K type (EC:3.4.-.-)
Signal peptide peptidase SppA, 36K type n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08NW4_STIAD id=5223724 bin=16ft_combo_ws3_JS1 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_72
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

83766..85613
-----------------
DNA (1848bp)
protein (616aa)
Uncharacterized protein n=1 Tax=Acyrthosiphon pisum RepID=J9JRB6_ACYPI id=5223726 bin=16ft_combo_ws3_JS1 species=Acyrthosiphon pisum genus=Acyrthosiphon taxon_order=Hemiptera taxon_class=Insecta phylum=Arthropoda tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_73
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(85669..86445)
-----------------
DNA (777bp)
protein (259aa)
alias=16ft_combo_ws3_scaffold_12936_15 id=24575391 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_74
unknown

Not on your lists

comp(86606..88582)
-----------------
DNA (1977bp)
protein (659aa)
id=5223503 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ERMGT100_2_curated_scaffold_9_75
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(88593..90602)
-----------------
DNA (2010bp)
protein (670aa)
TonB-dependent receptor n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DTH2_THIND id=5223502 bin=16ft_combo_ws3_JS1 species=Thioalkalivibrio nitratireducens genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
TonB-dependent receptor
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_76
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90941..91333
-----------------
DNA (393bp)
protein (131aa)
DGPF domain protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1CY90_MYXXD
DGPF domain-containing protein
DGPF domain protein {ECO:0000313|EMBL:ABF92634.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus xanthus (strain DK 1622).;"
ERMGT100_2_curated_scaffold_9_77
unknown

Not on your lists

comp(91426..92229)
-----------------
DNA (804bp)
protein (268aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_9_78
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(92372..93016)
-----------------
DNA (645bp)
protein (215aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CSW4_SIDLE id=5223501 bin=16ft_combo_ws3_JS1 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
two component LuxR family transcriptional regulator
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_79
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(93013..94263)
-----------------
DNA (1251bp)
protein (417aa)
two-component histidine kinase id=24575396 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
histidine kinase dimerization and phosphoacceptor region
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_80
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(94290..95027)
-----------------
DNA (738bp)
protein (246aa)
id=5223728 bin=16ft_combo_ws3_JS1 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_81
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

95167..96330
-----------------
DNA (1164bp)
protein (388aa)
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Alicyclobacillus pohliae RepID=UPI0003729B42
phospho-2-dehydro-3-deoxyheptonate aldolase
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:ADG05359.1}; TaxID=562970 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
ERMGT100_2_curated_scaffold_9_82
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

96323..97099
-----------------
DNA (777bp)
protein (259aa)
Strongly similar to SAM-dependent methyltransferase YecO n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q625_9BACT
SAM-dependent methyltransferase {ECO:0000313|EMBL:GAN32775.1}; TaxID=1197129 species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
methyltransferase
ERMGT100_2_curated_scaffold_9_83
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

97099..97872
-----------------
DNA (774bp)
protein (258aa)
Lipid A phosphate methyltransferase n=2 Tax=Nitrosococcus oceani RepID=Q3J7D2_NITOC
phospholipid methyltransferase
Phospholipid methyltransferase {ECO:0000313|EMBL:AHG92559.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
ERMGT100_2_curated_scaffold_9_84
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

98040..99338
-----------------
DNA (1299bp)
protein (433aa)
Ser/Thr protein phosphatase family protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YHM9_THEYD id=5223729 bin=16ft_combo_ws3_JS1 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Ser/Thr protein phosphatase family protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_85
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

99335..102244
-----------------
DNA (2910bp)
protein (970aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PRF 81 RepID=N6UW46_9RHIZ id=5223730 bin=16ft_combo_ws3_JS1 species=Rhizobium freirei genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_86
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

102339..104435
-----------------
DNA (2097bp)
protein (699aa)
hypothetical protein; K06888 id=24505321 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_87
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

104452..106341
-----------------
DNA (1890bp)
protein (630aa)
Thioredoxin n=1 Tax=Melioribacter roseus (strain P3M) RepID=I7A1U1_MELRP id=5223742 bin=16ft_combo_ws3_JS1 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
thioredoxin
Tax=RBG_16_RIF_WS3X_71_46_curated
ERMGT100_2_curated_scaffold_9_88
unknown

Not on your lists

comp(106360..106920)
-----------------
DNA (561bp)
protein (187aa)

This feature has no annotations

ERMGT100_2_curated_scaffold_9_89
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(106966..108297)
-----------------
DNA (1332bp)
protein (444aa)
Magnesium transporter n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IGK1_ANADE
magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=290397 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-C).;"
ERMGT100_2_curated_scaffold_9_90
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(108344..108820)
-----------------
DNA (477bp)
protein (159aa)
alias=16ft_combo_ws3_scaffold_1406_39 id=24505318 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying items 61-90 of 221 in total

View Taxonomy