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ERMGT828_2_curated_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 225 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ERMGT828_2_curated_scaffold_56_1
R_RIF_OD1_10_43_60, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(3..1643)
-----------------
DNA (1641bp)
protein (547aa)
hypothetical protein id=17311708 bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_43_60_curated
ERMGT828_2_curated_scaffold_56_2
unknown

Not on your lists

comp(1711..1854)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_3
RHI_SM2F11_42_22, SM2F11, Bacteria

Not on your lists

comp(2060..2425)
-----------------
DNA (366bp)
protein (122aa)
PAS/PAC sensor hybrid histidine kinase id=3012814 bin=GWC1_OD1_38_17 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
bacterial regulatory s, luxR family protein
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_42_22_curated
ERMGT828_2_curated_scaffold_56_4
Croceibacter atlanticus, Croceibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2522..3106)
-----------------
DNA (585bp)
protein (195aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) RepID=A3U9C9_CROAH
RNA polymerase ECF-type sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:EAP86415.1}; TaxID=216432 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceibacter.;" source="Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090).;"
ERMGT828_2_curated_scaffold_56_5
unknown

Not on your lists

3217..3708
-----------------
DNA (492bp)
protein (164aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_6

Not on your lists

comp(3942..4502)
-----------------
DNA (561bp)
protein (187aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Prevotella sp. oral taxon 299 str. F0039 RepID=D3ID84_9BACT
Marine sediment metagenome DNA, contig: S01H1_L01884 {ECO:0000313|EMBL:GAF85437.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
sigma-70 family RNA polymerase sigma factor
ERMGT828_2_curated_scaffold_56_7
R_SM2F11_49_9, SM2F11, Bacteria

Not on your lists

comp(4576..4773)
-----------------
DNA (198bp)
protein (66aa)
cold-shock protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037364D4
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_SM2F11_49_9_curated
ERMGT828_2_curated_scaffold_56_8
Oscillatoriales cyanobacterium JSC-12, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(4947..5951)
-----------------
DNA (1005bp)
protein (335aa)
Putative esterase of the alpha-beta hydrolase superfamily n=1 Tax=Oscillatoriales cyanobacterium JSC-12 RepID=K8GG04_9CYAN
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:EKQ67863.1}; TaxID=864702 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales.;" source="Oscillatoriales cyanobacterium JSC-12.;"
patatin
ERMGT828_2_curated_scaffold_56_9
unknown

Not on your lists

6100..6351
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_10
RIFOXYD2_FULL_OD1_52_8_curated, Parcubacteria, Bacteria

Not on your lists

comp(6517..6747)
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003473AAE
putative periplasmic or secreted lipoprotein
Tax=RIFOXYD2_FULL_OD1_52_8_curated
ERMGT828_2_curated_scaffold_56_11
R_OD1_Giovannonibacteria_44_11, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(6752..7030)
-----------------
DNA (279bp)
protein (93aa)
Putative uncharacterized protein id=2883416 bin=GWF2_OP3_43_52 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OD1_Giovannonibacteria_44_11_curated
ERMGT828_2_curated_scaffold_56_12
CG_Berkel_03, Berkelbacteria, Bacteria

Not on your lists

comp(7106..7591)
-----------------
DNA (486bp)
protein (162aa)
Predicted membrane protein n=2 Tax=Legionella pneumophila RepID=D5TEI7_LEGP2
hypothetical protein
Tax=CG_Berkel_03
ERMGT828_2_curated_scaffold_56_13
unknown

Not on your lists

comp(7593..7979)
-----------------
DNA (387bp)
protein (129aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_14
R_SM2F11_45_18, SM2F11, Bacteria

Not on your lists

comp(7986..9779)
-----------------
DNA (1794bp)
protein (598aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA id=74137 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
lepA; GTP-binding protein LepA
Tax=RIFCSPHIGHO2_01_FULL_SM2F11_45_18_curated
ERMGT828_2_curated_scaffold_56_15
unknown

Not on your lists

comp(9863..10186)
-----------------
DNA (324bp)
protein (108aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_16
unknown

Not on your lists

comp(10323..10685)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(10768..12405)
-----------------
DNA (1638bp)
protein (546aa)
Integral membrane protein MviN (Fragment) n=1 Tax=uncultured bacterium RepID=K1Z9G5_9BACT
mviN2; virulence factor MviN
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ERMGT828_2_curated_scaffold_56_18
RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

comp(12406..14634)
-----------------
DNA (2229bp)
protein (743aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2GAY8_9BACT
hypothetical protein
Tax=RIFOXYC1_FULL_OD1_Moranbacteria_44_13_curated
ERMGT828_2_curated_scaffold_56_19
R_SM2F11_46_24, SM2F11, Bacteria

Not on your lists

comp(14644..15750)
-----------------
DNA (1107bp)
protein (369aa)
ftsW; cell division membrane protein; K03588 cell division protein FtsW id=16561 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
stage V sporulation protein E
Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_24_curated
ERMGT828_2_curated_scaffold_56_20
RIFOXYD1_FULL_OD1_36_11_curated, Parcubacteria, Bacteria

Not on your lists

comp(15773..17110)
-----------------
DNA (1338bp)
protein (446aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=uncultured bacterium RepID=K2BYZ3_9BACT
hypothetical protein
Tax=RIFOXYD1_FULL_OD1_36_11_curated
ERMGT828_2_curated_scaffold_56_21
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(17120..18685)
-----------------
DNA (1566bp)
protein (522aa)
nth:Nther_2753 amidohydrolase 3 id=8779 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
d-aminoacylase
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
ERMGT828_2_curated_scaffold_56_22
CG_Falkow_02, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(18686..19723)
-----------------
DNA (1038bp)
protein (346aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase id=2169482 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
Tax=CG_Falkow_02
ERMGT828_2_curated_scaffold_56_23
unknown

Not on your lists

19918..20211
-----------------
DNA (294bp)
protein (98aa)

This feature has no annotations

ERMGT828_2_curated_scaffold_56_24
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(20260..21222)
-----------------
DNA (963bp)
protein (321aa)
dacB; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4); K01286 D-alanyl-D-alanine carboxypeptidase [EC:3.4.16.4] id=96619 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
serine-type D-Ala-D-Ala carboxypeptidase
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
ERMGT828_2_curated_scaffold_56_25
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

21342..21662
-----------------
DNA (321bp)
protein (107aa)
Thioredoxin n=1 Tax=Thermoanaerobacterium thermosaccharolyticum M0795 RepID=L0IKW3_THETR
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=698948 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum M0795.;"
ERMGT828_2_curated_scaffold_56_26
RHI_SM2F11_48_16, SM2F11, Bacteria

Not on your lists

comp(21714..23606)
-----------------
DNA (1893bp)
protein (631aa)
pla:Plav_0314 hypothetical protein id=16522 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
ERMGT828_2_curated_scaffold_56_27
R_SM2F11_50_11, SM2F11, Bacteria

Not on your lists

comp(23645..24997)
-----------------
DNA (1353bp)
protein (451aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B5C451
Tax=RIFCSPHIGHO2_01_FULL_SM2F11_50_11_curated
ERMGT828_2_curated_scaffold_56_28
R_SM2F11_46_11, SM2F11, Bacteria

Not on your lists

comp(25109..26194)
-----------------
DNA (1086bp)
protein (362aa)
sigma-70 region 4 domain protein id=96367 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_SM2F11_46_11_curated
ERMGT828_2_curated_scaffold_56_29
R_SM2F11_43_13b, SM2F11, Bacteria

Not on your lists

comp(26375..27268)
-----------------
DNA (894bp)
protein (298aa)
Protein translocase subunit SecF id=1273321 bin=GWE1_ACD58_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_ACD58_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Replace with complete genome
Protein translocase subunit SecF
Tax=RIFCSPHIGHO2_02_FULL_SM2F11_43_13b_curated
ERMGT828_2_curated_scaffold_56_30
GWF2_OD1_43_32, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(27320..28846)
-----------------
DNA (1527bp)
protein (509aa)
Preprotein translocase subunit SecD {ECO:0000313|EMBL:KKT12978.1}; TaxID=1618643 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Falkowbacteria) bacterium GW2011_GWF2_43_32.;"
gvi:gvip549 secD; protein-export membrane protein; K03072 preprotein translocase subunit SecD id=3286270 bin=GWC1_CPR2_39_9 species=ACD30 genus=ACD30 taxon_order=ACD30 taxon_class=ACD30 phylum=OP11 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
secD; preprotein translocase subunit SecD
Displaying items 1-30 of 225 in total

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