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berkeley_reactor_200306_biofilm_scaffold_95231

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Displaying items 151-180 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_145
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

153193..154221
DNA (1029bp) protein (343aa)
pyridoxal 4-dehydrogenase (EC:1.1.1.107)
Pyridoxal 4-dehydrogenase {ECO:0000313|EMBL:ADV13526.1}; EC=1.1.1.107 {ECO:0000313|EMBL:ADV13526.1};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
UPI0003CEB295 related cluster n=1 Tax=unknown RepID=UPI0003CEB295
berkeley_reactor_200306_biofilm_scaffold_95231_146
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

154277..154576
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003612B1B
Uncharacterized protein {ECO:0000313|EMBL:EDQ32805.2}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_147
bacterium YEK0313, Bacteria

Not on your lists

154589..156256
DNA (1668bp) protein (556aa)
sulfite reductase n=1 Tax=Methylopila sp. M107 RepID=UPI00037A88A3
Sulfite reductase [ferredoxin] {ECO:0000313|EMBL:CEJ16094.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
nitrite/sulfite reductase ferredoxin-like protein
berkeley_reactor_200306_biofilm_scaffold_95231_148
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

156240..157013
DNA (774bp) protein (258aa)
Phosphoadenosine phosphosulfate reductase {ECO:0000256|HAMAP-Rule:MF_00063}; EC=1.8.4.8 {ECO:0000256|HAMAP-Rule:MF_00063};; 3'-phosphoadenylylsulfate reductase {ECO:0000256|HAMAP-Rule:MF_00063}; PAPS reductase, thioredoxin dependent {ECO:0000256|HAMAP-Rule:MF_00063}; PAPS sulfotransferase {ECO:0000256|HAMAP-Rule:MF_00063}; PAdoPS reductase {ECO:0000256|HAMAP-Rule:MF_00063}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037D4973
phosphoadenosine phosphosulfate reductase
berkeley_reactor_200306_biofilm_scaffold_95231_149
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

157024..157524
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003727882
Oxidoreductase probably involved in sulfite reduction {ECO:0000313|EMBL:EJW10788.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
oxidoreductase probably involved in sulfite reduction
berkeley_reactor_200306_biofilm_scaffold_95231_150
bacterium YEK0313, Bacteria

Not on your lists

157628..157996
DNA (369bp) protein (123aa)
Uncharacterized protein {ECO:0000313|EMBL:CEJ13353.1}; Flags: Precursor;; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
berkeley_reactor_200306_biofilm_scaffold_95231_151
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(157989..158825)
DNA (837bp) protein (279aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000371E077
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:KFG69935.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
CDP-diacylglycerol--serine O-phosphatidyltransferase
berkeley_reactor_200306_biofilm_scaffold_95231_152
bacterium YEK0313, Bacteria

Not on your lists

comp(158841..159539)
DNA (699bp) protein (233aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7V2_9RHOB
psd; phosphatidylserine decarboxylase
berkeley_reactor_200306_biofilm_scaffold_95231_153
Pseudomonas resinovorans, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

159756..160556
DNA (801bp) protein (267aa)
ATP-binding protein n=1 Tax=Pseudomonas pyrrocinia RepID=UPI0002F7F21A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN46704.1}; TaxID=1245471 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas resinovorans NBRC 106553.;"
berkeley_reactor_200306_biofilm_scaffold_95231_154
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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160642..161430
DNA (789bp) protein (263aa)
amino acid ABC transporter n=1 Tax=Xanthobacteraceae RepID=UPI00036E526A
Amino acid ABC transporter {ECO:0000313|EMBL:ESW86934.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
amino acid ABC transporter binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_155
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

161547..162260
DNA (714bp) protein (238aa)
His/Glu/Gln/Arg/opine family amino acid ABC transporter permease n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HYK8_PSEUO
ABC transporter permease {ECO:0000313|EMBL:ETM65737.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
amino acid ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_95231_156
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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162257..162955
DNA (699bp) protein (233aa)
nickel permease n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI00028942AE
Nickel permease {ECO:0000313|EMBL:EQM70396.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
nickel permease
berkeley_reactor_200306_biofilm_scaffold_95231_157
Mycobacterium neoaurum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

163125..164465
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Mycobacterium neoaurum VKM Ac-1815D RepID=V5XH85_MYCNE
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:CDQ43497.1}; TaxID=1795 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium neoaurum.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_158
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(164587..165381)
DNA (795bp) protein (265aa)
putative dimethylarginine dimethylaminohydrolase (EC:3.5.3.18)
Amidinotransferase n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KDM2_9RHIZ
Amidinotransferase {ECO:0000313|EMBL:EMG53280.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
berkeley_reactor_200306_biofilm_scaffold_95231_159
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165523..165990
DNA (468bp) protein (156aa)
Endoribonuclease L-PSP n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IXE7_RHOP2
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ABD07113.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
berkeley_reactor_200306_biofilm_scaffold_95231_160
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

165993..166733
DNA (741bp) protein (247aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9N5_STAND
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ADH88811.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_95231_161
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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166730..167959
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LXW0_METRJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAN49405.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
berkeley_reactor_200306_biofilm_scaffold_95231_162
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

168032..168670
DNA (639bp) protein (213aa)
peroxidase (EC:1.11.1.7)
Peroxidase {ECO:0000313|EMBL:ADH87397.1}; EC=1.11.1.7 {ECO:0000313|EMBL:ADH87397.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
peroxidase n=1 Tax=Xanthobacteraceae RepID=UPI000380AA37
berkeley_reactor_200306_biofilm_scaffold_95231_163
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

168744..169160
DNA (417bp) protein (139aa)
Histidine triad (HIT) protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QS10_METTR
HIT family hydrolase {ECO:0000313|EMBL:KFB10197.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
histidine triad (HIT) protein
berkeley_reactor_200306_biofilm_scaffold_95231_164
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(169169..169561)
DNA (393bp) protein (131aa)
Putative integron gene cassette protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PT16_9RHIZ
Aldehyde-activating protein {ECO:0000313|EMBL:KJB95107.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
glutathione-dependent formaldehyde-activating, GFA
berkeley_reactor_200306_biofilm_scaffold_95231_165
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

169758..170324
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1ML36_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CCW17950.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
berkeley_reactor_200306_biofilm_scaffold_95231_166
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

170548..172035
DNA (1488bp) protein (496aa)
Putative ATP-dependent RNA helicase {ECO:0000313|EMBL:KFC68912.1}; EC=3.6.1.- {ECO:0000313|EMBL:KFC68912.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
DEAD/DEAH box helicase domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UHC1_METS4
DEAD/DEAH box helicase
berkeley_reactor_200306_biofilm_scaffold_95231_167
bacterium YEK0313, Bacteria

Not on your lists

172137..173192
DNA (1056bp) protein (352aa)
Diguanylate cyclase n=2 Tax=Oligotropha carboxidovorans RepID=B6JHF4_OLICO
Response regulator PleD {ECO:0000313|EMBL:CEJ13162.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
diguanylate cyclase
berkeley_reactor_200306_biofilm_scaffold_95231_168
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(173199..173603)
DNA (405bp) protein (135aa)
methylmalonyl-CoA epimerase (EC:5.1.99.1)
Methylmalonyl-CoA epimerase {ECO:0000313|EMBL:ACL59020.1}; EC=5.1.99.1 {ECO:0000313|EMBL:ACL59020.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
Methylmalonyl-CoA epimerase n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IUW2_METNO
berkeley_reactor_200306_biofilm_scaffold_95231_169
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(173600..174736)
DNA (1137bp) protein (379aa)
Anhydro-N-acetylmuramic acid kinase {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085893}; EC=2.7.1.170 {ECO:0000256|HAMAP-Rule:MF_01270, ECO:0000256|SAAS:SAAS00085888};; AnhMurNAc kinase {ECO:0000256|HAMAP-Rule:MF_01270}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
anhydro-N-acetylmuramic acid kinase n=1 Tax=Methylocystis parvus RepID=UPI0002F418A9
anmK; anhydro-N-acetylmuramic acid kinase
berkeley_reactor_200306_biofilm_scaffold_95231_170
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

174820..176067
DNA (1248bp) protein (416aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00009759}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VM13_RHOPX
berkeley_reactor_200306_biofilm_scaffold_95231_171
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(176080..179439)
DNA (3360bp) protein (1120aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IU20_METNO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL60878.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_95231_172
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

179742..180209
DNA (468bp) protein (156aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A8H4_STAND
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADH88647.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_95231_173
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

180316..181647
DNA (1332bp) protein (444aa)
Peptidase M23B n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137R2_RHOPS
peptidase M23B
Peptidase M23B {ECO:0000313|EMBL:ABE39677.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
berkeley_reactor_200306_biofilm_scaffold_95231_174
unknown

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comp(181669..182106)
DNA (438bp) protein (146aa)

This feature has no annotations

Displaying items 151-180 of 373 in total

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