ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_95231

Search features with annotation key words

Displaying items 181-210 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_175
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182365..183345
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035DC92B
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EIM25685.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
periplasmic binding protein/LacI transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_176
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183407..184966
DNA (1560bp) protein (520aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000377E953
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFG68283.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
berkeley_reactor_200306_biofilm_scaffold_95231_177
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184959..185951
DNA (993bp) protein (331aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000361D5D1
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:EIM25683.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters
berkeley_reactor_200306_biofilm_scaffold_95231_178
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

185951..186985
DNA (1035bp) protein (345aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003648262
ABC transporter {ECO:0000313|EMBL:EPE94694.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_95231_179
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187103..187345
DNA (243bp) protein (81aa)
UPI0003CE48BC related cluster n=1 Tax=unknown RepID=UPI0003CE48BC
Prevent-host-death protein {ECO:0000313|EMBL:ESY64083.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_180
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187345..187725
DNA (381bp) protein (127aa)
UPI0003CE0B2D related cluster n=1 Tax=unknown RepID=UPI0003CE0B2D
DNA-binding protein {ECO:0000313|EMBL:ESY64084.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
Toxin of toxin-antitoxin (TA) system, containing PIN domain for nucleic acid binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_181
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187850..189940
DNA (2091bp) protein (697aa)
Putative dimethyl sulfoxide reductase(DMSO reductase) n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AVS7_AZOBR
Dehydrogenase {ECO:0000313|EMBL:AIB14962.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_95231_182
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

189982..190335
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2P8_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH91578.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_95231_183
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(190342..190974)
DNA (633bp) protein (211aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Phosphoribosylglycinamide formyltransferase n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZKJ7_METPB
phosphoribosylglycinamide formyltransferase
berkeley_reactor_200306_biofilm_scaffold_95231_184
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(190971..192044)
DNA (1074bp) protein (358aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000255|HAMAP-Rule:MF_00741}; EC=6.3.3.1 {ECO:0000255|HAMAP-Rule:MF_00741};; AIR synthase {ECO:0000255|HAMAP-Rule:MF_00741}; AIRS {ECO:0000255|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000255|HAMAP-Rule:MF_00741}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=PUR5_METS4
phosphoribosylaminoimidazole synthetase
berkeley_reactor_200306_biofilm_scaffold_95231_185
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(192041..193024)
DNA (984bp) protein (328aa)
Agmatinase, putative n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4E5_POLGS
Agmatinase
Agmatinase, putative {ECO:0000313|EMBL:ADZ71087.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_95231_186
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

193312..193686
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRG9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KFC73115.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_187
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(193870..194346)
DNA (477bp) protein (159aa)
30S ribosomal protein S9 n=113 Tax=Brucella RepID=RS9_BRUC2
30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
berkeley_reactor_200306_biofilm_scaffold_95231_188
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(194351..194812)
DNA (462bp) protein (154aa)
50S ribosomal protein L13 n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F6D2BE
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|SAAS:SAAS00083943}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
berkeley_reactor_200306_biofilm_scaffold_95231_189
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195007..195570)
DNA (564bp) protein (188aa)
NAD(P)H nitroreductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379B3B1
nitroreductase
Malonate-semialdehyde dehydrogenase (Acetylating)/methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ERF85193.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
berkeley_reactor_200306_biofilm_scaffold_95231_190
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

195727..196659
DNA (933bp) protein (311aa)
Putative drug/metabolite exporter (DME) family transporter n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN04_RHITR
Membrane protein {ECO:0000313|EMBL:KDP71346.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Transmembrane drug/metabolite transporter family protein
berkeley_reactor_200306_biofilm_scaffold_95231_191
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196691..197578
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2Y4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM30576.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_192
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(197590..198240)
DNA (651bp) protein (217aa)
LuxR family transcriptional regulator n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B8P9_9RHIZ
LuxR family transcriptional regulator
LuxR family transcriptional regulator {ECO:0000313|EMBL:AGK58642.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
berkeley_reactor_200306_biofilm_scaffold_95231_193
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(198240..199643)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BDS2_9RHIZ
Integral membrane sensor signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_95231_194
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

199849..200427
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q8E4_METSZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCJ06907.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
berkeley_reactor_200306_biofilm_scaffold_95231_195
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200462..200890)
DNA (429bp) protein (143aa)
Phosphoribosyl-AMP cyclohydrolase {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00006950}; Short=PRA-CH {ECO:0000256|HAMAP-Rule:MF_01021};; EC=3.5.4.19 {ECO:0000256|HAMAP-Rule:MF_01021, ECO:0000256|SAAS:SAAS00103216};; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
phosphoribosyl-AMP cyclohydrolase (EC:3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z074_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_95231_196
bacterium YEK0313, Bacteria

Not on your lists

comp(200899..201543)
DNA (645bp) protein (215aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
GTP cyclohydrolase I (EC:3.5.4.16)
GTP cyclohydrolase I n=1 Tax=Methylosinus sp. LW4 RepID=UPI0003655BEA
berkeley_reactor_200306_biofilm_scaffold_95231_197
bacterium YEK0313, Bacteria

Not on your lists

201712..202170
DNA (459bp) protein (153aa)
nitrogen-fixing protein NifU n=1 Tax=Xanthobacteraceae RepID=UPI00036BAC69
Uncharacterized protein {ECO:0000313|EMBL:CEJ12669.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
nitrogen-fixing NifU domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_95231_198
Streptomyces collinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

202167..202748
DNA (582bp) protein (194aa)
dihydrolipoamide acyltransferase n=1 Tax=Streptomyces sp. CNY243 RepID=UPI00037CE3A1
aminotransferase
Aminotransferase {ECO:0000313|EMBL:AGS69336.1}; TaxID=1214242 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces collinus Tu 365.;"
berkeley_reactor_200306_biofilm_scaffold_95231_199
bacterium YEK0313, Bacteria

Not on your lists

202745..203065
DNA (321bp) protein (107aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003603D88
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_200
bacterium YEK0313, Bacteria

Not on your lists

203120..205084
DNA (1965bp) protein (655aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
threonyl-tRNA synthetase n=1 Tax=Kaistia granuli RepID=UPI000369D178
thrS; threonyl-tRNA synthetase
berkeley_reactor_200306_biofilm_scaffold_95231_201
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

205213..206715
DNA (1503bp) protein (501aa)
DNA helicase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036494EA
Replicative DNA helicase {ECO:0000313|EMBL:EIM29605.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
replicative DNA helicase
berkeley_reactor_200306_biofilm_scaffold_95231_202
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

206771..207871
DNA (1101bp) protein (367aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU000608};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000310C36F
berkeley_reactor_200306_biofilm_scaffold_95231_203
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

207876..208262
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y640_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP39690.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
berkeley_reactor_200306_biofilm_scaffold_95231_204
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(208295..208606)
DNA (312bp) protein (104aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JID3_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05747.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying items 181-210 of 373 in total

View Taxonomy