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berkeley_reactor_200306_biofilm_scaffold_95231

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Displaying items 211-240 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_205
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

208757..210172
DNA (1416bp) protein (472aa)
DNA repair protein radA n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QA28_9BRAD
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
radA; DNA repair protein RadA
berkeley_reactor_200306_biofilm_scaffold_95231_206
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

210346..210990
DNA (645bp) protein (215aa)
Colicin V production protein n=2 Tax=Bradyrhizobiaceae RepID=F7QLZ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42433.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
colicin V production protein
berkeley_reactor_200306_biofilm_scaffold_95231_207
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

211052..212530
DNA (1479bp) protein (493aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
Amidophosphoribosyltransferase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHD9_BEII9
amidophosphoribosyltransferase
berkeley_reactor_200306_biofilm_scaffold_95231_208
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

212654..213394
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZEX8_METPB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACB82506.1}; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
berkeley_reactor_200306_biofilm_scaffold_95231_209
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(213395..214942)
DNA (1548bp) protein (516aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QX05_METTR
Uncharacterized protein {ECO:0000313|EMBL:CCD98000.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
conserved membrane hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_210
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

215162..215812
DNA (651bp) protein (217aa)
Putative ParB-like nuclease n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M523_METRJ
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ45722.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
putative ParB-like nuclease
berkeley_reactor_200306_biofilm_scaffold_95231_211
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

215903..216607
DNA (705bp) protein (235aa)
UPI0003CEBB66 related cluster n=1 Tax=unknown RepID=UPI0003CEBB66
Uncharacterized protein {ECO:0000313|EMBL:ESY63799.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_212
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(216631..218304)
DNA (1674bp) protein (558aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036D522A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS90294.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
berkeley_reactor_200306_biofilm_scaffold_95231_213
bacterium YEK0313, Bacteria

Not on your lists

218516..219064
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Burkholderia kururiensis RepID=UPI00037FC2BD
Uncharacterized protein {ECO:0000313|EMBL:CEJ11173.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_214
bacterium YEK0313, Bacteria

Not on your lists

219067..219606
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI00035CEB31
Uncharacterized protein {ECO:0000313|EMBL:CEJ11172.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_215
Streptomyces rapamycinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(219619..220422)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI00038318F6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP60880.1}; TaxID=1343740 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rapamycinicus NRRL 5491.;"
berkeley_reactor_200306_biofilm_scaffold_95231_216
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

220626..221966
DNA (1341bp) protein (447aa)
Trehalosemaltose ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JL40_AGRRK
thuE; trehalosemaltose ABC transporter
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:EJK78915.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
berkeley_reactor_200306_biofilm_scaffold_95231_217
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

221966..222913
DNA (948bp) protein (316aa)
Putative threhalose/maltose ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSB2_RHITR
putative threhalose/maltose ABC transporter, permease protein
Putative threhalose/maltose ABC transporter, permease protein {ECO:0000313|EMBL:AGB74188.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_218
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

222923..223768
DNA (846bp) protein (282aa)
Trehalosemaltose ABC transporter n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JL42_AGRRK
thuG; trehalosemaltose ABC transporter
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAJ95347.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
berkeley_reactor_200306_biofilm_scaffold_95231_219
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

223765..225048
DNA (1284bp) protein (428aa)
ADP-dependent phosphofructokinase/glucokinase-like protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A0R9_RHILW
ADP-dependent phosphofructokinase/glucokinase-like protein
ADP-dependent phosphofructokinase/glucokinase-like protein {ECO:0000313|EMBL:ACI58203.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
berkeley_reactor_200306_biofilm_scaffold_95231_220
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

225179..226183
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1M7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGM34428.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_221
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

226315..226572
DNA (258bp) protein (86aa)
Prevent-host-death family protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LU39_9BURK
Prevent-host-death family protein {ECO:0000313|EMBL:EGJ11857.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_222
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

226569..226988
DNA (420bp) protein (140aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
Ribonuclease VapC n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LU38_9BURK
twitching motility protein PilT
berkeley_reactor_200306_biofilm_scaffold_95231_223
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227028..227273)
DNA (246bp) protein (82aa)
Plasmid stabilization protein n=3 Tax=Mesorhizobium RepID=V7GEF2_9RHIZ
Plasmid stabilization protein {ECO:0000313|EMBL:ESW85941.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
Arc domain-/DNA-binding domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_95231_224
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(227355..228848)
DNA (1494bp) protein (498aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YW36_9RHIZ
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EIM28178.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
diguanylate cyclase
berkeley_reactor_200306_biofilm_scaffold_95231_225
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(228977..229708)
DNA (732bp) protein (244aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003777773
Transcriptional regulator {ECO:0000313|EMBL:EJJ27605.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
GntR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_95231_226
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

229813..231213
DNA (1401bp) protein (467aa)
Uronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013440}; EC=5.3.1.12 {ECO:0000256|HAMAP-Rule:MF_00675, ECO:0000256|SAAS:SAAS00013438};; Glucuronate isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; Uronic isomerase {ECO:0000256|HAMAP-Rule:MF_00675}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
Uronate isomerase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HMP2_9RHIZ
glucuronate isomerase
berkeley_reactor_200306_biofilm_scaffold_95231_227
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

231272..232447
DNA (1176bp) protein (392aa)
ABC-type uncharacterized transport system, periplasmic component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YL46_9RHIZ
Methylobacterium aquaticum DNA, complete genome, strain: MA-22A {ECO:0000313|EMBL:BAQ47095.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
ABC-type uncharacterized transport system, periplasmic component
berkeley_reactor_200306_biofilm_scaffold_95231_228
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

232581..233702
DNA (1122bp) protein (374aa)
Ferredoxin n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5C2_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EHS52056.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
ferredoxin
berkeley_reactor_200306_biofilm_scaffold_95231_229
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

233699..235669
DNA (1971bp) protein (657aa)
Mechanosensitive ion channel family protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LDW9_9PROT
Mechanosensitive ion channel protein {ECO:0000313|EMBL:KAJ03142.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
MscS family protein YbiO
berkeley_reactor_200306_biofilm_scaffold_95231_230
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235809..237248
DNA (1440bp) protein (480aa)
deoxyribodipyrimidine photo-lyase (EC:4.1.99.3)
Deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:ADH88714.1}; EC=4.1.99.3 {ECO:0000313|EMBL:ADH88714.1};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Deoxyribodipyrimidine photo-lyase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A909_STAND
berkeley_reactor_200306_biofilm_scaffold_95231_231
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(237255..238109)
DNA (855bp) protein (285aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZZE1_RHILW
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACI54734.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
berkeley_reactor_200306_biofilm_scaffold_95231_232
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

238124..239155
DNA (1032bp) protein (344aa)
cysteine synthase A (EC:2.5.1.47)
Pyridoxal-5'-phosphate-dependent protein beta subunit n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6C9_9BRAD
O-acetylserine dependent cystathionine beta-synthase {ECO:0000313|EMBL:CEG08118.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
berkeley_reactor_200306_biofilm_scaffold_95231_233
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

239227..239943
DNA (717bp) protein (239aa)
Threonyl/alanyl tRNA synthetase SAD n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A907_STAND
Threonyl/alanyl tRNA synthetase SAD {ECO:0000313|EMBL:KFC70412.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
threonyl/alanyl tRNA synthetase SAD
berkeley_reactor_200306_biofilm_scaffold_95231_234
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(239963..241015)
DNA (1053bp) protein (351aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000382864E
YVTN family beta-propeller repeat protein {ECO:0000313|EMBL:EGD59531.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
gluconolactonase
Displaying items 211-240 of 373 in total

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