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berkeley_reactor_200306_biofilm_scaffold_95231

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Displaying items 241-270 of 373 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_95231_235
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241149..241760)
DNA (612bp) protein (204aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVD4_9RHIZ
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
sulfite oxidase subunit YedZ
berkeley_reactor_200306_biofilm_scaffold_95231_236
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(241760..242704)
DNA (945bp) protein (315aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Microvirga sp. WSM3557 RepID=I4YVD3_9RHIZ
oxidoreductase molybdopterin binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_237
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(242806..243933)
DNA (1128bp) protein (376aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
tgt; Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) (guanine insertion enzyme) (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KMJ2_METEX
berkeley_reactor_200306_biofilm_scaffold_95231_238
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(243930..245015)
DNA (1086bp) protein (362aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WBA2_9CAUL
S-adenosylmethionine/tRNA-ribosyltransferase-isomerase
berkeley_reactor_200306_biofilm_scaffold_95231_239
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245093..245566)
DNA (474bp) protein (158aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000313|EMBL:KFC69012.1}; EC=5.2.1.8 {ECO:0000313|EMBL:KFC69012.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptidyl-prolyl cis-trans isomerase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030C5403
cyclophilin type peptidyl-prolyl cis-trans isomerase
berkeley_reactor_200306_biofilm_scaffold_95231_240
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(245678..247384)
DNA (1707bp) protein (569aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
lysK; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R2G1_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_95231_241
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

247644..248273
DNA (630bp) protein (210aa)
Membrane protein, MarC family n=1 Tax=Microvirga sp. WSM3557 RepID=I4YX52_9RHIZ
UPF0056 membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Multiple antibiotic resistance (MarC)-related protein
berkeley_reactor_200306_biofilm_scaffold_95231_242
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(248327..248833)
DNA (507bp) protein (169aa)
single-stranded DNA-binding protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036D1E38
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
single-strand binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_243
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249021..249626)
DNA (606bp) protein (202aa)
Putative phosphopantetheinyltransferase family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSE4_RHITR
putative phosphopantetheinyltransferase family protein
Putative phosphopantetheinyltransferase family protein {ECO:0000313|EMBL:AGB74147.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_244
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(249665..253708)
DNA (4044bp) protein (1348aa)
Vicibactin biosynthesis non-ribosomal peptide synthase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JKK9_AGRRK
Vicibactin biosynthesis non-ribosomal peptide synthase protein {ECO:0000313|EMBL:ACM30451.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
vbsS; vicibactin biosynthesis non-ribosomal peptide synthase protein
berkeley_reactor_200306_biofilm_scaffold_95231_245
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

253868..254197
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVH3_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74149.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_246
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254203..254874
DNA (672bp) protein (224aa)
Two-component system, regulatory protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVK6_RHITR
two-component system, regulatory protein
Two-component system, regulatory protein {ECO:0000313|EMBL:AGB74150.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_247
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

254871..256295
DNA (1425bp) protein (475aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Two-component sensor histidine kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTX3_RHITR
two-component sensor histidine kinase
berkeley_reactor_200306_biofilm_scaffold_95231_248
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256267..257166)
DNA (900bp) protein (300aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036A8812
Ribokinase {ECO:0000313|EMBL:KKB78279.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_249
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

257326..258303
DNA (978bp) protein (326aa)
TerC family transporter n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5N633_9RHIZ
TerC family integral membrane protein
TerC family integral membrane protein {ECO:0000313|EMBL:AIC26494.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
berkeley_reactor_200306_biofilm_scaffold_95231_250
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

258539..259354
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036161DC
Uncharacterized protein {ECO:0000313|EMBL:KGM31498.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_251
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


259635..260117
DNA (483bp) protein (161aa)
30S ribosomal protein S6 n=1 Tax=Xanthobacteraceae RepID=UPI000370E7C6
30S ribosomal protein S6
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_95231_252
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


260121..260360
DNA (240bp) protein (80aa)
30S ribosomal protein S18 n=4 Tax=Bradyrhizobium RepID=RS18_BRASB
rpsR; 30S ribosomal protein S18
30S ribosomal protein S18 {ECO:0000255|HAMAP-Rule:MF_00270}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
berkeley_reactor_200306_biofilm_scaffold_95231_253
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

260562..261551
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LFU2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11893.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_254
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


261570..262148
DNA (579bp) protein (193aa)
50S ribosomal protein L9 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J1N3_POLGS
rplI; 50S ribosomal protein L9
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_95231_255
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

262376..263380
DNA (1005bp) protein (335aa)
patatin n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI000370FE0D
patatin
Patatin {ECO:0000313|EMBL:ACA17636.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_95231_256
Mycobacterium cosmeticum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(263401..263997)
DNA (597bp) protein (199aa)
isochorismatase n=1 Tax=Mycobacterium sp. 360MFTsu5.1 RepID=UPI00036B1523
Isochorismatase hydrolase {ECO:0000313|EMBL:CDO05516.1}; TaxID=258533 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium cosmeticum.;"
isochorismatase
berkeley_reactor_200306_biofilm_scaffold_95231_257
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(264042..265628)
DNA (1587bp) protein (529aa)
Gamma-glutamyltranspeptidase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KCU5_MESAW
gamma-glutamyltranspeptidase
Gamma-glutamyltransferase {ECO:0000313|EMBL:CDX43032.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
berkeley_reactor_200306_biofilm_scaffold_95231_258
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(265625..266344)
DNA (720bp) protein (240aa)
GntR family transcriptional regulator n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B49DE5
Transcriptional regulator {ECO:0000313|EMBL:CDX14743.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
ycbG; hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_259
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

266519..267355
DNA (837bp) protein (279aa)
Putative polar amino acid ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV91_RHITR
putative polar amino acid ABC transporter, substrate-binding protein
Putative polar amino acid ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74060.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_260
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

267367..268137
DNA (771bp) protein (257aa)
Putative polar amino acid ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV66_RHITR
putative polar amino acid ABC transporter, permease protein
Putative polar amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGB74059.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_biofilm_scaffold_95231_261
Acidiphilium sp. JA12-A1, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

268134..268910
DNA (777bp) protein (259aa)
ABC transporter n=1 Tax=Pseudomonas sp. PAMC 26793 RepID=UPI0002EEE0C4
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:KDM68711.1}; TaxID=1464546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium sp. JA12-A1.;"
arginine ABC transporter ATP-binding protein
berkeley_reactor_200306_biofilm_scaffold_95231_262
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(268940..269368)
DNA (429bp) protein (143aa)
CBS domain containing protein n=5 Tax=Methylobacterium extorquens RepID=A9W501_METEP
Putative signal-transduction protein {ECO:0000313|EMBL:KFC67574.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_95231_263
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

269868..270077
DNA (210bp) protein (70aa)
cold-shock protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037C0C96
cspA-1; cold shock protein CspA 1
Cold shock protein CspA 1 {ECO:0000313|EMBL:AJD39972.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
berkeley_reactor_200306_biofilm_scaffold_95231_264
bacterium YEK0313, Bacteria

Not on your lists

270182..270448
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036B260C
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
rpsU; 30S ribosomal protein S21
Displaying items 241-270 of 373 in total

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