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berkeley_reactor_200306_biofilm_scaffold_127933

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_127933_31
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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35359..36354
DNA (996bp) protein (332aa)
Membrane protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YY70_9RHIZ
Membrane protein {ECO:0000313|EMBL:EMS41414.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
membrane protein
berkeley_reactor_200306_biofilm_scaffold_127933_32
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36351..37502
DNA (1152bp) protein (384aa)
Putative glycosyl transferase, putative membrane-associated protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIH7_HYPSM
glycosyl transferase membrane-associated protein
Putative glycosyl transferase, putative membrane-associated protein {ECO:0000313|EMBL:CCB66974.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_127933_33
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37499..38941
DNA (1443bp) protein (481aa)
Hopanoid biosynthesis associated radical SAM protein HpnJ n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y030_9PROT
Hopanoid biosynthesis associated radical SAM protein HpnJ {ECO:0000313|EMBL:EGY01126.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hopanoid biosynthesis associated radical SAM protein HpnJ
berkeley_reactor_200306_biofilm_scaffold_127933_34
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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38998..39777
DNA (780bp) protein (260aa)
Hopanoid biosynthesis associated protein HpnK n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U911_METS4
hopanoid biosynthesis associated protein HpnK
Hopanoid biosynthesis associated protein HpnK {ECO:0000313|EMBL:ACA20605.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_127933_35
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39857..40258
DNA (402bp) protein (134aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RUH9_RHORT
Uncharacterized protein {ECO:0000313|EMBL:CDX38617.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_127933_36
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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40255..40506
DNA (252bp) protein (84aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RUH8_RHORT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC22217.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
berkeley_reactor_200306_biofilm_scaffold_127933_37
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(40610..43177)
DNA (2568bp) protein (856aa)
Hopanoid biosynthesis associated RND transporter like protein HpnN n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS43_HYPDA
hopanoid biosynthesis associated RND transporter like protein HpnN
Hopanoid biosynthesis associated RND transporter like protein HpnN {ECO:0000313|EMBL:ADJ22302.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
berkeley_reactor_200306_biofilm_scaffold_127933_38
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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43508..44434
DNA (927bp) protein (309aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T1E6_9BRAD
berkeley_reactor_200306_biofilm_scaffold_127933_39
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44476..45279
DNA (804bp) protein (268aa)
Hopanoid biosynthesis associated radical SAM protein HpnH n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS41_HYPDA
hopanoid biosynthesis associated radical SAM protein HpnH
Putative radical SAM protein {ECO:0000313|EMBL:CCB66979.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
berkeley_reactor_200306_biofilm_scaffold_127933_40
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45334..45627
DNA (294bp) protein (98aa)
radical SAM protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036DFA33
Fe-S oxidoreductase
Predicted Fe-S oxidoreductase {ECO:0000313|EMBL:CAJ96952.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
berkeley_reactor_200306_biofilm_scaffold_127933_41
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(45547..46263)
DNA (717bp) protein (239aa)
Hopanoid-associated phosphorylase n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JS40_HYPDA
hopanoid-associated phosphorylase
Hopanoid-associated phosphorylase {ECO:0000313|EMBL:ADJ22299.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
berkeley_reactor_200306_biofilm_scaffold_127933_42
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46278..48242)
DNA (1965bp) protein (655aa)
Squalene/oxidosqualene cyclase n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B376_9RHIZ
squalene/oxidosqualene cyclase
Squalene/oxidosqualene cyclase {ECO:0000313|EMBL:AGK56662.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
berkeley_reactor_200306_biofilm_scaffold_127933_43
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48266..49540)
DNA (1275bp) protein (425aa)
Squalene-associated FAD-dependent desaturase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U918_METS4
squalene-associated FAD-dependent desaturase
Squalene-associated FAD-dependent desaturase {ECO:0000313|EMBL:ACA20612.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_127933_44
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(49540..50373)
DNA (834bp) protein (278aa)
Squalene synthase HpnD n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IK99_METNO
squalene synthase
Squalene synthase HpnD {ECO:0000313|EMBL:ACL61884.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_127933_45
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(50370..51245)
DNA (876bp) protein (292aa)
Phytoene synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UI80_9RHOB
Phytoene synthase {ECO:0000313|EMBL:EJW13284.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
squalene synthase
berkeley_reactor_200306_biofilm_scaffold_127933_46
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(51242..52390)
DNA (1149bp) protein (383aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2F3_9PROT
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EHL99651.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hopene-associated glycosyltransferase HpnB
berkeley_reactor_200306_biofilm_scaffold_127933_47
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(52407..53399)
DNA (993bp) protein (331aa)
NAD-dependent dehydratase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CABDB
WcaG protein {ECO:0000313|EMBL:BAQ47947.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
hpnA; hopanoid-associated sugar epimerase HpnA
berkeley_reactor_200306_biofilm_scaffold_127933_48
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

53654..54388
DNA (735bp) protein (245aa)
Hemolysin A n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ60_9RHIZ
Hemolysin {ECO:0000313|EMBL:KFG69792.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hemolysin A
berkeley_reactor_200306_biofilm_scaffold_127933_49
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54385..55590
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003655F95
(uracil-5)-methyltransferase
(Uracil-5)-methyltransferase {ECO:0000313|EMBL:ADH91701.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_127933_50
unknown

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comp(55653..55868)
DNA (216bp) protein (72aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_127933_51
unknown

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comp(56165..56389)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_127933_52
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56639..58048
DNA (1410bp) protein (470aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031FA8EF
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:KFC73374.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase FAD-binding subunit
berkeley_reactor_200306_biofilm_scaffold_127933_53
Hyphomonas adhaerens, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58048..58479
DNA (432bp) protein (144aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031107EB
Acetyltransferase {ECO:0000313|EMBL:KCZ85188.1}; TaxID=1280949 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas adhaerens MHS-3.;"
acetyltransferase
berkeley_reactor_200306_biofilm_scaffold_127933_54
bacterium YEK0313, Bacteria

Not on your lists

comp(58589..59314)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ58_9RHIZ
Putative SOS response-associated peptidase YedK {ECO:0000313|EMBL:CEJ10394.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_127933_55
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59435..59953
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYD1_POLGS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ71743.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_127933_56
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59970..60689)
DNA (720bp) protein (240aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIW8_XANP2
cytochrome c-type biogenesis protein CcdA (DsbD analog)
Cytochrome c-type biogenesis protein CcdA (DsbD analog) {ECO:0000313|EMBL:BAQ18768.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
berkeley_reactor_200306_biofilm_scaffold_127933_57
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(60693..61079)
DNA (387bp) protein (129aa)
Thioredoxin-related n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5ASA9_METEA
Thioredoxin-related
Thioredoxin-related {ECO:0000313|EMBL:ACS40350.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
berkeley_reactor_200306_biofilm_scaffold_127933_58
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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61348..62181
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=1 Tax=Burkholderia graminis C4D1M RepID=B1FUX3_9BURK
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EDT12199.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
AraC family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_127933_59
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62223..62669
DNA (447bp) protein (149aa)
NUDIX hydrolase n=1 Tax=Rhodovulum sp. PH10 RepID=J6J990_9RHOB
NUDIX hydrolase {ECO:0000313|EMBL:EJW12285.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
NUDIX hydrolase
Displaying items 31-59 of 59 in total

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