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berkeley_reactor_200306_biofilm_scaffold_18395_10

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 13481..15070

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000364F152 similarity UNIREF
DB: UNIREF100
  • Identity: 68.1
  • Coverage: 523.0
  • Bit_score: 746
  • Evalue 1.70e-212
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 526.0
  • Bit_score: 754
  • Evalue 6.50e-215
oligopeptide ABC transporter, periplasmic oligopeptide-binding protein similarity KEGG
DB: KEGG
  • Identity: 68.3
  • Coverage: 523.0
  • Bit_score: 751
  • Evalue 1.50e-214

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1590
ATGACGGTCGGCTTCAGGGCACGCCTCTTGGCTCTTCTGGTCGTGGCGGGCATCGGCGGGGCGGCTCCCGCCCTGGCCGAGACGGTCCTCCACAAGGGCAACGGCGGCGAGCCGCAGACGCTCGATCCCGCCCACACCTCGATCAATGTCGAGGAGTTCATTCTCAAGGACCTGTTCGAAGGCCTGACCATCTACGACGCCGGCGGCAAGATCATCCCCGGCGCGGCCGAGAGCTGGACCGTGTCGCCGGACGGCACGGTCTACACCTTCAAGATCCGCGCCGGCGCGGCGTGGTCGAACGGCGACCCCGTGACCGCGGACGACTTCGTCTATTCCTTCCGCCGGGTCGAGGACCCGAAGGAGGCGGCGGGCTACGCCAACATCCTGTTCCCGCTCAAGAACGCCGAGGCGATCAACGGCGGCAAGGCGCCGGTCGACACGCTCGGCGCCAAGGCCGTCGACGCCAAGACGCTGGAATTGACCCTGGAGCGGCCGACACCCTACCTGAGCCAGCTCCTGGCGCACCAGACGGCGCTGCCGGTCAACAAGGCCTCGATCGACAAGTTCAAGGCCGACTTCATCAAGCCGGGCAACATGGTCTCGAACGGGGCCTATATGCTCGCCGAGAACGTCGCCAACGACCACATCACCATGGTCAAGAACCCGCACCATTGGGATGCGGCCAATGTGAAGATCGACAGGATCGTCTCCTATCCCACCGAGGACCAGGCGGCGACGCAGCGCCGCTTCCTCGCAAGCGAGCTCGATCTCGCCTACAATTTCCAGGCCGACCAGACCGCCTTCCTGAAGGAGAAGCTCGGCGACCAGGTGCACATCACCCCGGCCACCGCGACCTATTACTACGTCTTCGACGGCCGCAAGCCGCCCTTCGACGACGTGCGCGTGCGCCAGGCTTTCTCCATGGCGATCGACCGCGATTTCCTCGCCGACAAGATCTATGCCGGCGCCCAGCTGCCGACCTACAGCTTCGTGCCCGACGGCATCGCCGGCTACACCCCGGCCAAGCTCGACTTCGCCGACATGTCGCAGCTCGACCGCGAGGACAAGGCCAAGGCGCTCTTGAAGGAAGCGGGCTATGGCGAGGGCGGCAAGCCGCTGAAGGTCGAGATCCGCTACAACACCAACGAGAACCACAAGAAGGTGGCGACCGCCGTCGCCGACATGTGGAAGGGGCTCGGCGCCGACGTCACCATCCTCAACGCCGACGTGAAGACCCACTACGCCTATCTCCAGGAAGGCGGGTCCTTCGACGTCGCCCGCGCCGGCTGGGTCGCCGACTATGCCGACCCCGAGAACTTCCTCACTCTGGCGATCTCCTCCAACAAGACCTTCAACTACGGCCACTACAGCAACCCCGACTACGACGCGCTGGTGGCCAAGTCCTACCTGGAGCGTGACCCGGCGGCCCGCATGAAGATCCTGCACGATGCCGAGGTGATGCTGCTGCGCGACCAGTCGCTGACGCCGATGATGAACAACGCCGACCTCTGGCTGGTGTCGAGCAAGGTCAAGGGCTGGCAGGACAACGCCGCCAACCAGCATCTGACGCGCTTCCTGTCGAAGGAATGA
PROTEIN sequence
Length: 530
MTVGFRARLLALLVVAGIGGAAPALAETVLHKGNGGEPQTLDPAHTSINVEEFILKDLFEGLTIYDAGGKIIPGAAESWTVSPDGTVYTFKIRAGAAWSNGDPVTADDFVYSFRRVEDPKEAAGYANILFPLKNAEAINGGKAPVDTLGAKAVDAKTLELTLERPTPYLSQLLAHQTALPVNKASIDKFKADFIKPGNMVSNGAYMLAENVANDHITMVKNPHHWDAANVKIDRIVSYPTEDQAATQRRFLASELDLAYNFQADQTAFLKEKLGDQVHITPATATYYYVFDGRKPPFDDVRVRQAFSMAIDRDFLADKIYAGAQLPTYSFVPDGIAGYTPAKLDFADMSQLDREDKAKALLKEAGYGEGGKPLKVEIRYNTNENHKKVATAVADMWKGLGADVTILNADVKTHYAYLQEGGSFDVARAGWVADYADPENFLTLAISSNKTFNYGHYSNPDYDALVAKSYLERDPAARMKILHDAEVMLLRDQSLTPMMNNADLWLVSSKVKGWQDNAANQHLTRFLSKE*