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berkeley_reactor_200306_biofilm_scaffold_18395_11

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 15109..16032

Top 3 Functional Annotations

Value Algorithm Source
Oligopeptide transport system permease protein OppB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7W7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 74.9
  • Coverage: 307.0
  • Bit_score: 483
  • Evalue 8.90e-134
Oligopeptide ABC transport system permease protein OppB {ECO:0000313|EMBL:EYR78740.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.9
  • Coverage: 307.0
  • Bit_score: 483
  • Evalue 1.20e-133
oppB; oligopeptide transport system permease OppB similarity KEGG
DB: KEGG
  • Identity: 74.6
  • Coverage: 307.0
  • Bit_score: 481
  • Evalue 1.60e-133

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 924
ATGCTGCGCTTCGTGCTCCGGCGTCTCCTCAGCGCGGTGCCGACCTTGTTCGTCGTCGTCACCCTGTCCTTCTTCCTGATGCGCTTCGCCCCCGGCGGGCCGTTCAACATGGAGCGGCCGCTGCCGCCGCAGATCATGGCGAACATGATCCGGGTCTACCATCTCGACGACCCGCTCTGGCGCCAATACCTCACCTATCTCGGCAATGTGCTGCACGGCGATTTCGGGCCGAGCTACATCTACCGCGACTTCACCATCCTGCAGCTGATGGGCCAGAGCCTGCCCTATTCGCTGACGCTGGGCGCGCTGGCGCTGCTGATCGCCGTGGTCGGCGGCGTCGGGCTCGGCACGGTGGCGGCGCTGCGCCAGAACTCGGCCGTCGACGTTGCTGTCATGAGCATCGCCAATATCGGCATCACCGTGCCCAACTTCGTCGTCGGCCCGGTGCTGGCCCTGATCTTCGCCGTGCTGCTCGGCTGGCTGCCAGCCGGGGGCTGGGGCGACGGCTCGCCGCGCTTCCTGGTGATGCCGATGATCGCCCTGGCGCTGCCGGAGCTCGCCGTGTTCGCCCGGCTGATGCGCGGCGCCATGCTGGAGGCGCTGCGCGCCGACCATATCCGCACGGCGCGGGCCTACGGCCTGCCGGCGCGCGTCACGGTGGTCGGCCATGCCATGCGGGCGGCGCTGCTGCCCGTCGTCACCTATCTCGCGCCCTCGGCGGCGCAGCTCCTGACGGGATCGGTGGTGATCGAGACCATCTTCGGCATCCCCGGGGTCGGGCGCTATTTCGTGCTCGGGGCGCTCAACCGCGACTACACGCTGGTCATGGCGACGGTGGTGCTGATCTCGGTGTTCATCGTCGTGTTCAACCTGATCGTCGACCTCCTCTACGCCCTGCTCGACCCCAGGGTGCGCTATGACTGA
PROTEIN sequence
Length: 308
MLRFVLRRLLSAVPTLFVVVTLSFFLMRFAPGGPFNMERPLPPQIMANMIRVYHLDDPLWRQYLTYLGNVLHGDFGPSYIYRDFTILQLMGQSLPYSLTLGALALLIAVVGGVGLGTVAALRQNSAVDVAVMSIANIGITVPNFVVGPVLALIFAVLLGWLPAGGWGDGSPRFLVMPMIALALPELAVFARLMRGAMLEALRADHIRTARAYGLPARVTVVGHAMRAALLPVVTYLAPSAAQLLTGSVVIETIFGIPGVGRYFVLGALNRDYTLVMATVVLISVFIVVFNLIVDLLYALLDPRVRYD*