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berkeley_reactor_200306_biofilm_scaffold_35412_10

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 8992..9918

Top 3 Functional Annotations

Value Algorithm Source
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNM9_ACHXA similarity UNIREF
DB: UNIREF100
  • Identity: 40.0
  • Coverage: 290.0
  • Bit_score: 205
  • Evalue 6.10e-50
Bacterial regulatory helix-turn-helix protein, LysR family protein 122 {ECO:0000313|EMBL:CDX22910.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.4
  • Coverage: 298.0
  • Bit_score: 309
  • Evalue 4.20e-81
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 40.0
  • Coverage: 290.0
  • Bit_score: 205
  • Evalue 1.70e-50

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Taxonomy

Mesorhizobium plurifarium → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 927
ATGCTCAGCATGACCGGCCTGCGGACCTTCGTGGCCGTGGTGGAGACCGGCGGGATCCGCGCCGCGGCGGAGCGGCTGCACCGCACCCCTTCGGCGATCTCGATGACGCTGAAGCAGCTGGAGAAGGAGATCGGCGGCGCGCTCTTCGCCAGCGAGCGCAAGAGCACGCTCTCCGATCTCGGCGACCGGGTGCTCGACGAGGCGCAGGCGCTGCTGGCGCATTACGACCGCACCAGCGCGGCGCTGCACGCCTTCGTCGCCAACCGGGTCGGCCGCTGCGACATCGCCAGCGTGCCCTCGGTGGCGACCACCATCCTGCCCCAGGCCATCGTGGCGCTGCGCCGCGGGGCGCCGTGGATGGACATCAGCGTCCGGGACATGGATTCGGCCGGGATCGTCGATGCGGTCGAGGACGGCGCGGTCGAGATCGGCTTCGGCGTGCTGCACCAGCCGCGCCCGGGCCTCATGTTCGAGCCGATGCTGCGCGACAGGCTCGACCTGGTGTGCCGGGCCGACCATCCCCTGGCCGAAGGCGCCGAGCCGATCGCCTGGCGCCAGATCGCGCCGCGGGAGTTCATCACCAACGGCAGCATCGGGTTGCCGCGCCTCGTCGAGGCCGGCACCCTGGCGCGCCGGAGCCATCTCGAGGCACGAAACGTCACCTCGATCCTGGCGATGGTCCGCGCCGGCCTCGGGGTCTCGGTGCTGCCGCGGCTGTGCCGCACGGCCGGCGATGCGCAGATCCGCTTCCTGCCGCTCGAGGACCCGGCCGCCGAGCGCACGCTCGGCTGCATCGTCGCGGCGGAGAGGCTGCTGCAGCCGGCGACCGAGCGCCTGCTGGACGCGGTGCGGGCCGTGATGGCGCAGCGCGCCGACGAGCTCGGCTATGCCATCGCCTTCACGGCCGGCGCCACGACGGCGGCTTGA
PROTEIN sequence
Length: 309
MLSMTGLRTFVAVVETGGIRAAAERLHRTPSAISMTLKQLEKEIGGALFASERKSTLSDLGDRVLDEAQALLAHYDRTSAALHAFVANRVGRCDIASVPSVATTILPQAIVALRRGAPWMDISVRDMDSAGIVDAVEDGAVEIGFGVLHQPRPGLMFEPMLRDRLDLVCRADHPLAEGAEPIAWRQIAPREFITNGSIGLPRLVEAGTLARRSHLEARNVTSILAMVRAGLGVSVLPRLCRTAGDAQIRFLPLEDPAAERTLGCIVAAERLLQPATERLLDAVRAVMAQRADELGYAIAFTAGATTAA*