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berkeley_reactor_200306_biofilm_scaffold_35412_18

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 18246..19046

Top 3 Functional Annotations

Value Algorithm Source
UPI0003CF3078 related cluster n=1 Tax=unknown RepID=UPI0003CF3078 similarity UNIREF
DB: UNIREF100
  • Identity: 31.4
  • Coverage: 258.0
  • Bit_score: 129
  • Evalue 2.80e-27
Putative transcriptional regulator {ECO:0000313|EMBL:EYR81935.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.9
  • Coverage: 258.0
  • Bit_score: 193
  • Evalue 3.80e-46
IclR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 32.5
  • Coverage: 240.0
  • Bit_score: 125
  • Evalue 2.00e-26

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 801
TTGAGCGCAGATGACAAGAATTTGAGCAAGACCGTGCAGGAGAAGGAGCCGGGCTCGGCGCCGCTGCGCCGGGCGGCGACCATTCTGGATGCCGTCGCTGCGGCGCGTGAGGGCGTGCCCCTGCAGCACATCTGCGATGCCGTTGGCCTGCCGGTGTCGACGACCCACCGGCTGCTGCAGAGCCTGCTGGCGATCGGCTATCTCGCGTTCGATGCGGAACGCAAGCGCTACCGGATCGGCAGCCGCCTGGTGCGGCTGGTCCATATCAGCCAGGACACCGCCACCATCAAGATGCAGGCCGACCCGCTCCTGACCGCCCTGGCCAACCGGTTCCGTCAGACCGCCTTCCTGACGCAGCTCGTCGGCGAGGAGCTGGAGCTGGTCACCTATGCCCTGCCCGACGAGCCGCTGGGCTCGGCGATCTACCCCGGCGGACGCTTCCCGATCCACGCCACGGCGACGGGCAAGGCGACCTTCGCCTTCCAGCCCGAGGCCGTCGTCGACCGGCTGCTGCGCCGCCCGCTGGAGAAGCTCCAGCCGGCGACGCTCGCCGACCCCGAGGCAGTGCGGCGCGAGCTGGAGACAGTGCGCCAGCTCGGCTACGCGGTGATCGATTCGGAGTTCGATCCCGGCGTCTTCGCCATCGGCTGCCCCGTGATCTCCGCCAGCGGCAGCGTCACCTTCGCCGTCGCCCTGGTGGGCCTCGGCGAGAACATGCGCAACGACCACACGATCGAGGCCTATGCGGCTGCGCTGAAGGCGACCGCGCGCGATCTGGCGACCTTGATCGCGCGGGCCTGA
PROTEIN sequence
Length: 267
LSADDKNLSKTVQEKEPGSAPLRRAATILDAVAAAREGVPLQHICDAVGLPVSTTHRLLQSLLAIGYLAFDAERKRYRIGSRLVRLVHISQDTATIKMQADPLLTALANRFRQTAFLTQLVGEELELVTYALPDEPLGSAIYPGGRFPIHATATGKATFAFQPEAVVDRLLRRPLEKLQPATLADPEAVRRELETVRQLGYAVIDSEFDPGVFAIGCPVISASGSVTFAVALVGLGENMRNDHTIEAYAAALKATARDLATLIARA*