ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_44227_22

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 18698..19705

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxyproline epimerase {ECO:0000313|EMBL:KIX47184.1}; EC=5.1.1.8 {ECO:0000313|EMBL:KIX47184.1};; TaxID=1911 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.8
  • Coverage: 334.0
  • Bit_score: 282
  • Evalue 4.60e-73
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000372E58F similarity UNIREF
DB: UNIREF100
  • Identity: 83.3
  • Coverage: 335.0
  • Bit_score: 572
  • Evalue 2.10e-160
proline racemase similarity KEGG
DB: KEGG
  • Identity: 44.9
  • Coverage: 334.0
  • Bit_score: 278
  • Evalue 1.30e-72

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Streptomyces griseus → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1008
ATGCGATCCACACGCATCATCCAGGGCATCGACAGCCACACCGCAGGCTGCCCACTCCGCCTGATCACCTCGGGCTTCGGCCCGATCCGCGGCAAGACCATGGTGGAGAAGCGCGCCGACCTGATGACCCGCGACGAGCTGCGCCAGCTCGTCCTGTTCGAGCCGCGCGGCAGCTTCAACATGCCGGCCGCCGTGCTGACCGAGGCCTGCTCGCCCGACGCCGATATCGGCATGATCATCCTGGAGCCGGACACCTATCCGCCGATGTGCGGCCATTGCGCCATGGCCGTGGCAACGATCGCGGTCGAGGCCGGCTACATCAAGGCGGTGGAGGGCGAGACGCTGGTGCGGCTCGACACGCCGGCCGGCGTGGTGCCGGCCCGCGTCGCGGTCGAGAACGGGCGCGCGGTCTCGGTGACGCTCGAAATGCCCGCCTCCTTCCTCTACCGCCGCGACGTGATGCTGGAGACGCCGAGCTTCGGCCGGGTGCGCGGCGACATCGCCTTCGGCGGCGATTTCTACCTCCTGGTCGAGGCGGCCGATCTCGGCCTCGACCTCGTTCCCGAGCAGGCCTGGCAGCTGGTCGGCGCCGCGGCGGAGCTGCGCGCCGCCCTCAAGGACGTGCCGGTGCAGCATCCGACCATGACCCATATCAACGAGATCTACCAGATCGAGCTGATCGGGCCCGGCAACGGCACCACCTCGGACGCGCGCAACGTCGTGGTCTGCCCGCCGACCGTGATCGACCGCTCGCCCTGCGGCACCGGCACCGCCTCGCGCATGGCGATGCTGCACGGCCTCGGCCGGATGAAGGCCGGCGACACGCTGCGGCATGCCGGCATCCTCGACACCGTCTTCACCGGCCGGATCACCGGCGAGACCAGGCTGGCCGAAACGCCGGCCATCACCTGCACGGTGACGGGCAGCGCCTATCTCACCGGCACCTTCAACTTCCTCCTCGACCCGCACGACCCGTTCCAGGCGGGATTCCGCCTGACGGGCGTGTGA
PROTEIN sequence
Length: 336
MRSTRIIQGIDSHTAGCPLRLITSGFGPIRGKTMVEKRADLMTRDELRQLVLFEPRGSFNMPAAVLTEACSPDADIGMIILEPDTYPPMCGHCAMAVATIAVEAGYIKAVEGETLVRLDTPAGVVPARVAVENGRAVSVTLEMPASFLYRRDVMLETPSFGRVRGDIAFGGDFYLLVEAADLGLDLVPEQAWQLVGAAAELRAALKDVPVQHPTMTHINEIYQIELIGPGNGTTSDARNVVVCPPTVIDRSPCGTGTASRMAMLHGLGRMKAGDTLRHAGILDTVFTGRITGETRLAETPAITCTVTGSAYLTGTFNFLLDPHDPFQAGFRLTGV*