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berkeley_reactor_200306_biofilm_scaffold_54892_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 2..1063

Top 3 Functional Annotations

Value Algorithm Source
secretin n=1 Tax=Afipia birgiae RepID=UPI0002F2335A similarity UNIREF
DB: UNIREF100
  • Identity: 49.0
  • Coverage: 367.0
  • Bit_score: 348
  • Evalue 6.70e-93
Secretin {ECO:0000313|EMBL:KIZ45156.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 356.0
  • Bit_score: 346
  • Evalue 3.60e-92
type II and III secretion system protein similarity KEGG
DB: KEGG
  • Identity: 49.5
  • Coverage: 366.0
  • Bit_score: 344
  • Evalue 2.70e-92

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1062
CGCGACATCAGCCCGATCGCCCGGGCGATCCAGGAGGCGGTGCCCGGCAGCGAGATCGTGGTGCGCCAGCTCAACGAGGGCGTGCTGCTCAGCGGCTACGTCAATTCCGCCGACGATGCGTCGCGGGCGGTGGCCATCGCTTCCCAGTTCCTCGGCAAGGACGGCGCCGTCGCCAACTCCATCTCGATCCGCGCCCGAGAGCAGGTCATGCTGAAGGTGACCGTGGCCGAGGTGCAGCGCCAGGTCCTCAAGCAGCTCGGCATCAACCTTTCCGGCGGCAACAACAGCGGCACCATCTCCTTCTCGACCTCCAATCCCTTCGGCCTCGCCGGAGCGATCGCCAGCGGCAACACGGCCACGATCGGCAATTCCAACTTCAATGCAACGATTCAGGCCTTCGAGCGCGCCAATGTCATGCGCGCCCTGGCCGAACCGACGCTGACCGCCATCTCCGGCGAATCCGCCAAGTTCCTGGCCGGCGGCGAATATCCCATCCTGACCAGCTCGAGCTGCGACAGCAACGGAGCGAACTGCCAGAGCGGCTATACCTACAAGCAGTTCGGCGTCGGGCTCACCTTCACGCCGGTGGTGCTGAACGAGGGCCGCATCAGCCTGAAGGTCGCCACCGAAGTCTCCGACATCGACGACAAGAACACCTTCACCACCACCGACGGCGCCGTGATCCCCGCCTTCACCGTGAGCCGCGCCGACACCACGGTCGAGCTCGCCTCCGGCGCCTCGCTTGTCATGGCCGGCATGATCCAGCAGAACACCAAGCAGGTGGTCAACGGCACGCCGGGGCTGATGAACATCCCGATCCTCGGCCAGCTCTTCCGCTCGCGCGACTACCAGCGCGACAACACCGAGCTGATGATCATGGTCACGCCCTATCTCGCCAAGGCGGTCGACCGCAAGGACATCGCCCTGCCGAGCGACGGCTTCACCGACGCCTCCGATCCCTCGACCTTCCTGCTCGGGCGCTTCAACAAGATCTACGGGGTGCGCGGCGCGCCCCCGCCGGCCGGCAAGCTCGCCGGACGCTACGGCTTCACCCTCGACTGA
PROTEIN sequence
Length: 354
RDISPIARAIQEAVPGSEIVVRQLNEGVLLSGYVNSADDASRAVAIASQFLGKDGAVANSISIRAREQVMLKVTVAEVQRQVLKQLGINLSGGNNSGTISFSTSNPFGLAGAIASGNTATIGNSNFNATIQAFERANVMRALAEPTLTAISGESAKFLAGGEYPILTSSSCDSNGANCQSGYTYKQFGVGLTFTPVVLNEGRISLKVATEVSDIDDKNTFTTTDGAVIPAFTVSRADTTVELASGASLVMAGMIQQNTKQVVNGTPGLMNIPILGQLFRSRDYQRDNTELMIMVTPYLAKAVDRKDIALPSDGFTDASDPSTFLLGRFNKIYGVRGAPPPAGKLAGRYGFTLD*