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berkeley_reactor_200306_biofilm_scaffold_54892_9

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 13841..15361

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217K7_RHOPB similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 507.0
  • Bit_score: 627
  • Evalue 6.30e-177
RND efflux system outer membrane lipoprotein NodT similarity KEGG
DB: KEGG
  • Identity: 64.5
  • Coverage: 507.0
  • Bit_score: 627
  • Evalue 1.80e-177
RND efflux system, outer membrane lipoprotein, NodT {ECO:0000313|EMBL:ABD87429.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.5
  • Coverage: 507.0
  • Bit_score: 627
  • Evalue 8.80e-177

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Taxonomy

Rhodopseudomonas palustris → Rhodopseudomonas → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1521
ATGACCGGCGCAGCATCCGCGGGTGGCCGGCGGCCGGCTCGCCCTTCCCCTCCGCTGCGGGTCGCGGCGCTGCTTGCAGCCGCGTTGCTCGGCGGCTGCGCCGTGGTCGGCCCGGACTACCAGACCCCCCGCGTCGCGGTGCCGGGGCGCTGGAGCGGGGCCGCCGCCGCGCAGCAGCGCCAGCAGCCTCAGCTGTCGCAATGGTGGCGGCGCCTGAACGATCCGGTTTTGAACGGATTGATCGAAGAGGCGATATCAGGCAATCTCGACGTCGCCACCGCCAAGGCCAAGATCCGCGAGGCGCGCGCCACGAGGCGCGAGGCGGTCGGCGGTCTCTTTCCCACCCTCAGCGGCTCGGCCGACGCCGCCCGCAACCGCACGGGCGGCACCTCGACCAGCTCGGCCGGCGCCGGCAACATCACCTACAACACCTTCAGCGCCGGGCTCGACGCCAGCTGGGAGCTCGACCTGTTCGGCGCCAACCACCGCGCGGTGGAGGCGGCGACCTACGGCGTCGAGGCCGCCGAGGCCGACCTGCGCGCCACGCTGGTCACCCTGGTCGGCGACGTCGCCACCGCCTATGTCGATGCCCGCGGCTACCAGGCCCGCATCGCCCTCGCCCGCCGCACCGCCTCCTCCCAGCGCGACACCGCCGCGCTGACCCGGACCAAGTTCACGGCCGGCTCGGCCTCGGCCGTCGACGCGGCCAATGCCGACGCGGAAGCCGCCTCGACCGCCGCCAACATTCCCCTCTACGAGCAATCCTTCGCCCAGGACGTGCACCAGCTCAGCGTGCTGCTCGGGCGCGAGCCGACCGCCCTGGCGGAGCGGCTGAAGCGGACGGCGCCGATCCCCACGCCCGGACGCCCGCTGCCGACCGGCATTCCCGCCGACATCCTGCTGGTCCGCCCCGACGTGCGCGAGGCCGAGCGCCAGCTCGCCCAGTACACCGCCAAGGTCGGCCAGGCCGAGGCCGCGCTCTATCCCTCGGTCAGCCTCACCGGCTCGCTGTCGACCTCCGGCACCAAGATCGGCGACCTCGCCAAGAATTCCTCGATCAGCTGGTCGTTCGGGCCGTCGGTGAGCGTGCCGATCTTCCAGGGCGGCCAGCTCACGGCCGAGGTCGACATCGCCCGGGCCCAGCGCGACCAATATTTCATCGCCCTGCGCTCGGCCGTGCTGACCGCGCTGCAGGACGTGGAGAACGCGCTGGTCAACCTCTCGACCCAGCGGCGCAACGCCGCCCAGCTCGGCCAGGCGGTGAAGGGCTACCAGGACGCCGCCCGGCTGGCGCATGTGCTCTACCAGGCCGGCTCGGAGAGCTTCCTCGACGTGCTGACCGCCGACCGCTCTCTCTATTCGGCGCAGGATTCACTGCTGCAGAGCCGGGTCGCCATCACCAAATACTATGTCGCCCTCGCCAAGGCGCTGGGCGGCGGCTGGGACGGCGCCATCGACAGCTCGAAGCCGGAGGTGGTGGACACCAACACCGGGCCGCATCTGGCGGCGGCGCAGAATTGA
PROTEIN sequence
Length: 507
MTGAASAGGRRPARPSPPLRVAALLAAALLGGCAVVGPDYQTPRVAVPGRWSGAAAAQQRQQPQLSQWWRRLNDPVLNGLIEEAISGNLDVATAKAKIREARATRREAVGGLFPTLSGSADAARNRTGGTSTSSAGAGNITYNTFSAGLDASWELDLFGANHRAVEAATYGVEAAEADLRATLVTLVGDVATAYVDARGYQARIALARRTASSQRDTAALTRTKFTAGSASAVDAANADAEAASTAANIPLYEQSFAQDVHQLSVLLGREPTALAERLKRTAPIPTPGRPLPTGIPADILLVRPDVREAERQLAQYTAKVGQAEAALYPSVSLTGSLSTSGTKIGDLAKNSSISWSFGPSVSVPIFQGGQLTAEVDIARAQRDQYFIALRSAVLTALQDVENALVNLSTQRRNAAQLGQAVKGYQDAARLAHVLYQAGSESFLDVLTADRSLYSAQDSLLQSRVAITKYYVALAKALGGGWDGAIDSSKPEVVDTNTGPHLAAAQN*