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berkeley_reactor_200306_biofilm_scaffold_83611_18

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 17288..18025

Top 3 Functional Annotations

Value Algorithm Source
Amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family n=1 Tax=Rhizobium sp. CF142 RepID=J1SLX0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 61.6
  • Coverage: 237.0
  • Bit_score: 282
  • Evalue 2.40e-73
putative amino-acid ABC transporter permease protein yckA similarity KEGG
DB: KEGG
  • Identity: 66.2
  • Coverage: 231.0
  • Bit_score: 295
  • Evalue 1.30e-77
Putative amino-acid ABC transporter permease protein yckA {ECO:0000313|EMBL:CDM61324.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.2
  • Coverage: 231.0
  • Bit_score: 295
  • Evalue 6.60e-77

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Taxonomy

Rhizobium sp. LPU83 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 738
ATGACCAGCTTCTTCCAACCGATCCTGGCGAACCTCCACGACTGGGGACCGCAGCTCGTGAAGGCCAGCGGCACGACCATTCTCCTGACGCTGCTCGGCTTTGCCGCTGCATTCGCCTTGGGCCTCGCCGTCGAGTTCCTGCGCACCCGTCGATCCCCGCTCGTGCGACGGCTCGTCGATGGTTATCTCTTGATCCTGCGCGGCGTGCCCATCCTCGTCGTCCTCTACCTGCTCTATTTTGCGCTGCCTGGCATCGGCGTCACCTTGCCGGCTCTCGTCGCGGGCGTCCTGGGCCTCGGGCTGGTCTACAGCGCCTACCTCGCCGAGGTGTTTCGTGCCGGCCTGCAATCGGTGCCCAGGGGCCAGCGCGAAGCCGCGCTCGCCGCCGGGCTCACGCCCGCTCAAACCTTTCGGCTGGTGCTGTTTCCGCAAGCCGTCCGCGCGGTTCTGCCGCCTCTGCTGATCAGCCTGGTCTCCCTGCTCAAGGACAGCTCGATCTGCGCCCTCATCACGGTGCCCGAGCTCACGCTCACCTCGCGAGCCATCATGTCGGAGAGCTTCCTTCCCCTGCAGATCTTCGCGCTCACCGGCCTGTTCTATTTCATCATCGCCTGGCCGGCTTCGCTGGCGGTGCGGGCGCTCGAAAGGCGCCTGCAGCGCGGCCGCGCGCCGGGCCGGCGCCCCGCTCGACCGAGCCGGATGGCGACCGGCGCCGTCACCCTGGCCTCGGACAAATGA
PROTEIN sequence
Length: 246
MTSFFQPILANLHDWGPQLVKASGTTILLTLLGFAAAFALGLAVEFLRTRRSPLVRRLVDGYLLILRGVPILVVLYLLYFALPGIGVTLPALVAGVLGLGLVYSAYLAEVFRAGLQSVPRGQREAALAAGLTPAQTFRLVLFPQAVRAVLPPLLISLVSLLKDSSICALITVPELTLTSRAIMSESFLPLQIFALTGLFYFIIAWPASLAVRALERRLQRGRAPGRRPARPSRMATGAVTLASDK*