ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_79982_29

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(23721..26342)

Top 3 Functional Annotations

Value Algorithm Source
excinuclease ABC subunit B n=1 Tax=Methyloferula stellata RepID=UPI0003667B85 similarity UNIREF
DB: UNIREF100
  • Identity: 73.8
  • Coverage: 877.0
  • Bit_score: 1280
  • Evalue 0.0
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.8
  • Coverage: 886.0
  • Bit_score: 1288
  • Evalue 0.0
excinuclease ABC subunit B similarity KEGG
DB: KEGG
  • Identity: 72.1
  • Coverage: 885.0
  • Bit_score: 1255
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

bacterium YEK0313 → Bacteria

Sequences

DNA sequence
Length: 2622
ATGCCCAAAGAGCCCCAGAAGATCCGGCCGACCCGTGCCAAGGCGGCCAAGCCGACCCTGCCCTCGCTCGACGAGCACCTGAAGGCGCTGCTCAATCCGGCGCTGATCGAGCGGAAGGGCCTTTCCGAATCCCCGCAATCCGGCTTCGACATCGGCCCGGTGACCGGCGTCGACCCGGAGCTGGCTGCCAAGCTCAACCTGCCGACCGGCGGGGCGGCGATGCAGGGCCGCGCGGTCAAGCGCAAGGCCAAGAACGCGGTGGAGGAGATCCCCGATCCCGATGGGCTGGACCGGCTCGGCGGCTCGGCCGGCACCATCGCGGCGCTGACGCAGCTGCTCGAAGGCGGCGACCCGCGCATGCGGGACAAGCCGATCTGGACGCCGCACCGCCCATCCCGGCCGGACAAGTCGGAAGGCGGCATCCGCCTGGAGCTCGTCTCGGACTATGAGCCGGCCGGCGACCAGCCCACCGCCATCGCCGAGCTGGTCGAGGGCGTCACCCTGCAGCACGAGCGCGACCAGGTGCTGCTCGGCGTCACCGGCTCCGGCAAGACCTACACCATGGCTCAGGTGATCTCCCGGACCCAGCGCCCCGCCCTGATCCTGGCGCCGAACAAGACGCTGGCGGCGCAGCTCTATGGCGAGTTCAAGTCGGTCTTCCCGAACAACGCGGTGGAATATTTTGTCTCCTCCTACGACTATTACCAGCCGGAAGCCTATGTCCCGCGGACGGACACCTATATCGAGAAGGAATCCTCGATCAACGAGCAGATCGACCGCATGCGCCACTCCGCGACGCGCTCCCTGCTCGAACGCGACGACGTGATCATCGTCGCCTCGGTGTCCTGCATCTACGGCATCGGCTCGGTCGAGACCTACACGGCGATGACCTTCGGCATCACCGTGGGCGAGAAGGTCGAGCAGCGCCAGCTGATCGCCGACCTCGTCGCCCTGCAATACAAGCGGATCAGCGCCGATTTCGCCCGCGGCACCTTCCGGGTGCGCGGCGACGTGATCGAGCTGTTCCCGGCCCATTACGAGGACCGCGCCTGGCGGATCTCGCTGTTCGGCGACGAGATCGAGAGCATCGCCGAGTTCGACCCGCTCACCGGCCAGAAGATCGCCGACCTGAAATTCGTCAAGGTCTACGCCAACTCGCACTATGTCACGCCGAAGCCGACGCTGGCGCAGGCGATCAAGGGCATCAAGGAGGAGCTGAAGGCACGCCTGCAGGAGCTCTACACCCAGGGCCGCCTGCTCGAGGCGCAGCGGCTGGAGCAGCGCTGCACCTTCGACCTGGAAATGCTCGAGGCGACCGGCTCCTGCGCCGGCATCGAGAATTATTCGCGCTGGCTCACCGGCCGCCTGCCGGGCGAGCCGCCGCCGACCCTGTTCGAGTATCTCCCCGACAACGCCCTGGTCTTCACCGACGAGAGCCATGTCACCGTGCCGCAGATCGGCGCCATGTACAAAGGCGACTTCCGGCGCAAGGCGACGCTGGCCGAATACGGCTTCCGCCTGCCCTCCTGCCTCGACAACCGGCCGCTGCGCTTCGAGGAATGGGACGCGATGCGGCCGCAGACCGTGCACGTCTCGGCCACGCCCGGCAAATGGGAGATGGAGCGCACCGGCGGCGTCTTCGCCGAGCAGGTGATCCGCCCGACTGGCCTGATCGATCCGCCGACCGAGATCCGCCCGGCCCGCACCCAGGTCGACGACCTCCTCGGCGAGGTGCAGGTCACCGCCCGCGCCGGCTATCGCAGCCTGGTGACGGTGCTGACCAAGCGCATGGCCGAGGACCTGACGGAGTACCTGCACGACCACGGTGTGCGGGTGCGCTACATGCATTCCGACATCGACACGATCGAGCGCATCGAGATCATCCGCGACCTCCGGCTCGGCGCCTTCGACGTGCTGGTCGGCATCAACCTGCTGCGCGAGGGCCTCGACATCCCGGAATGCGCCCTGGTCGCCATCCTCGACGCCGACAAGGAAGGGTTCCTGCGCTCGGAGACCAGCCTGATCCAGACCATCGGCCGCGCCGCGCGCAATGTCGACGGACGGGTGCTGCTCTACGCCGATTCCATGACCGGCAGCCTGGAGCGGGCCATCGCCGAGACCAACCGCCGCCGCGAGAAGCAGACGGCCTGGAATGCCGAGCACGGCATCACGCCGGAGAGCGTCAAGCGCAATATCGGCGACATCGTCAACTCGGTCTACGAGCGCGACCGCGTCACCGTCGACAAGGGGCTGGCCGACAGCGTCGCCACGGTGGGCCATAACTTCGAGTCTGTCGTCGCCGACCTGGAGAAGCGCATGCGCGAGGCCGCCGCCGACCTGCGCTTCGAGGAGGCGGCGCGCCTGCGCGACGAGCTCAAGCGCCTGCGCGAGACCGAGATGGCGGTGGCCGACGACGGCGCGGCGCGTCCGGTGGCGATCCGCGACAAGGCCGGCGCCTATGCCGGGCCGAAGAGCTATGGCAGCGCCGCCAACCTGCCGCCGACGCGGGCGAGGAAGCCCGACCTCGACAGCATGGGGCCCGGCACCGACCGCGAGGTGCCGCTCGGCGCCGAGGTGCGCCGGAAGGGCGGCGGCAAGCCGGGCCGGGGATGGAAGCGGTAG
PROTEIN sequence
Length: 874
MPKEPQKIRPTRAKAAKPTLPSLDEHLKALLNPALIERKGLSESPQSGFDIGPVTGVDPELAAKLNLPTGGAAMQGRAVKRKAKNAVEEIPDPDGLDRLGGSAGTIAALTQLLEGGDPRMRDKPIWTPHRPSRPDKSEGGIRLELVSDYEPAGDQPTAIAELVEGVTLQHERDQVLLGVTGSGKTYTMAQVISRTQRPALILAPNKTLAAQLYGEFKSVFPNNAVEYFVSSYDYYQPEAYVPRTDTYIEKESSINEQIDRMRHSATRSLLERDDVIIVASVSCIYGIGSVETYTAMTFGITVGEKVEQRQLIADLVALQYKRISADFARGTFRVRGDVIELFPAHYEDRAWRISLFGDEIESIAEFDPLTGQKIADLKFVKVYANSHYVTPKPTLAQAIKGIKEELKARLQELYTQGRLLEAQRLEQRCTFDLEMLEATGSCAGIENYSRWLTGRLPGEPPPTLFEYLPDNALVFTDESHVTVPQIGAMYKGDFRRKATLAEYGFRLPSCLDNRPLRFEEWDAMRPQTVHVSATPGKWEMERTGGVFAEQVIRPTGLIDPPTEIRPARTQVDDLLGEVQVTARAGYRSLVTVLTKRMAEDLTEYLHDHGVRVRYMHSDIDTIERIEIIRDLRLGAFDVLVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGRVLLYADSMTGSLERAIAETNRRREKQTAWNAEHGITPESVKRNIGDIVNSVYERDRVTVDKGLADSVATVGHNFESVVADLEKRMREAAADLRFEEAARLRDELKRLRETEMAVADDGAARPVAIRDKAGAYAGPKSYGSAANLPPTRARKPDLDSMGPGTDREVPLGAEVRRKGGGKPGRGWKR*