ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_96262_2

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(111..1535)

Top 3 Functional Annotations

Value Algorithm Source
RND efflux system, outer membrane lipoprotein, NodT family n=1 Tax=Rhodovulum sp. PH10 RepID=J6UH55_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 57.3
  • Coverage: 450.0
  • Bit_score: 480
  • Evalue 1.20e-132
RND efflux system, outer membrane lipoprotein, NodT family {ECO:0000313|EMBL:EJW13276.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.3
  • Coverage: 450.0
  • Bit_score: 480
  • Evalue 1.60e-132
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 56.7
  • Coverage: 450.0
  • Bit_score: 476
  • Evalue 4.80e-132

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodovulum sp. PH10 → Rhodovulum → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1425
ATGACGGCGAGCGGCTGCGTCTCCGTGGAGGCGCCCGCGCCGAACCTGGACGTGCCGGCCGGCTACCGCCAGGCCTCGCGCACGCCCGACGCTGCCCTGCCGCGCTCGGAATGGTGGCGCGGCTTCCGCTCGCCCGAGCTCGACAGGCTCGTGGAGGGGTCCCGCACCGGCAATCTCGACATCGCCGCCGCCGTCGCCCGCATCCGCCAGGCGGACGCCGTGGCGGAGATCAACGGCGCGGCGCTGCTGCCGACCCTCGACGGCGGCGCCAACGCCTCGCGCAGCCGCAGCGCCGCCCTCGGCTCCGGCGCGCGGCCCCGCGGCCGCAACAATTACAGCCTGTCGCTCAGCGCCAGCTACCAGCTCGACTTCTGGGGCAAGAACCAGGCGGCGCTCGACGCGGCCCTGGCCAGCGCCCGCGCCAGCCGCTTCGACCGCGACACGGTCGAGCTCACCGCCGTCGCCAGCACCGCGACCACCTATTTCGACCTGCTGGCGGCGCAGGACCGGCTGCGCATCGCCCGTGAGAACGTCGCCAATGCCAGCCGCGTGCTCGGCGTCATCCAGCGGCGCCTCGATGCCGGCACCGCCACGGCGCTCGACGTGGCGGAGCAGCAGAGCCTGGTGGCGCAGCAGAAGGCGTCCATTCCGCCGCTCGAGCAGGAAGTCGCCCAGGACCAGGCGACCCTCGCCGTGCTCGTCGGCCGCGCGCCGGCGCATCTCACCGTCGCCGGCGGCAGCATGGACCGGCTGTCCAGCCCGCGCGTCACGCCGGGCCTGCCCTCGGCGCTGCTGGCCCAGCGCCCGGACATCCGCTCCGCCGAAGCCAGCCTCGCCGCCGCCCATGCCGACGTCGTGGCGGCGCGGGCGGCGTTCTTCCCCTCCATCCAGCTCACCGGCCAGGCCGGGGTCGAGAGTCTGGCCCTGAAGAGCCTGTTCGAGCCCTCCAGCACCTTCTATTCCATCGCCGCCGGCCTCACCCAGCCGATCTTCGACGGCGGCACGCTGCAGGGCCAGTTCAAGCAGGCCAAGGGCGTCGAGGCGGAGAACCTCGCCAATTACCGCAAGGCCGTGGTCTCGGCCTTCGCCGATGTCGAGAAGGCGCTGGTCGCCGTGCGCCAGCTCGGCCGCCAGGAGGCGCTGCAGCGCGACGTGGTCAAGAGCGCCCGCACCGCCTACCAGCTCTCCGAGCAGCAGCTGAACGAAGGCACGGTCGACATCACCACGGTGCTCAACAACCAGACGACGCTGTTCCAGGCGCAGAACACCCTCGTCGAGGTGAAGCTGTCGCGCCTGCAGGCCCTGGTGGCGCTGTTCCAGGCGCTCGGCGGCGGCTGGGACAAGCCGCCCGCCGCGCCGGCGGCGCCTCTGCCTGTACCGGTGCCGGTGCCGGTGCTCGTGCTCTCCCCCGCGGAGCGCTCGTGA
PROTEIN sequence
Length: 475
MTASGCVSVEAPAPNLDVPAGYRQASRTPDAALPRSEWWRGFRSPELDRLVEGSRTGNLDIAAAVARIRQADAVAEINGAALLPTLDGGANASRSRSAALGSGARPRGRNNYSLSLSASYQLDFWGKNQAALDAALASARASRFDRDTVELTAVASTATTYFDLLAAQDRLRIARENVANASRVLGVIQRRLDAGTATALDVAEQQSLVAQQKASIPPLEQEVAQDQATLAVLVGRAPAHLTVAGGSMDRLSSPRVTPGLPSALLAQRPDIRSAEASLAAAHADVVAARAAFFPSIQLTGQAGVESLALKSLFEPSSTFYSIAAGLTQPIFDGGTLQGQFKQAKGVEAENLANYRKAVVSAFADVEKALVAVRQLGRQEALQRDVVKSARTAYQLSEQQLNEGTVDITTVLNNQTTLFQAQNTLVEVKLSRLQALVALFQALGGGWDKPPAAPAAPLPVPVPVPVLVLSPAERS*