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berkeley_reactor_200306_biofilm_scaffold_96262_6

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(3550..5379)

Top 3 Functional Annotations

Value Algorithm Source
GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3F0_STAND similarity UNIREF
DB: UNIREF100
  • Identity: 58.2
  • Coverage: 615.0
  • Bit_score: 672
  • Evalue 2.70e-190
Fis family GAF modulated sigma-54 specific transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 58.2
  • Coverage: 615.0
  • Bit_score: 672
  • Evalue 7.60e-191
GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ADH89709.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.2
  • Coverage: 615.0
  • Bit_score: 672
  • Evalue 3.80e-190

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Taxonomy

Starkeya novella → Starkeya → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1830
ATGACGAGCCCATCGACGACGGCACCGGTCGAGATCGCGCGGCGGCAGTTTTTCGGGGAGGGTCGGCTGCCGCGAGCGATGGTGGGCGCCCCCATCGCCCGGTCCTGGCAGCGCTGCGCCGCCCTTGGCCTCGACATCGCGGCCTTCCCCGCCATCGAGCCGATGACCGCCGACGAGTTCCGGCACGTCTCGGCCTGCCACGAACGGCTGCGCCATGTCAGCCGCCCGGAGCTGCAGACGCTGCGGCAGGAGGCGCAGGCCATGGGCTCGGTGGTCATCCTCACCGATCCCGACGGCATCATTCTCGACACGCTGGGCGACGCGGAGTTCGCCGGCCGCGCCGCGCAGGTGGCGCTGCGGCCCGGCGTGCGCTGGAGCGAGGGTGGCACCGGCACCAATGCCATCGGCACGGCCCTCTACGAGCGGCGGCCGATCGAGGTGCACGGCGGCGAGCACTATTTCGAGACCCATGCGATCCTCACCTGTGCCGCCGCGCCGATCTTCGATCCGCAGGGGCGCATCGCCGGCGCGCTCGACCTCTCCGGCTCCGCCCTCGCCGACCATCGCTACGCCCTCGGCCTGGTGCGCATGGCGGTCGAGCAGATCGAGCACCGCTTCTTCGACGAGGGCTTCCGCGACGCCGAGGTCGTGCGCTTCCACACCGATCCGGACCTACTCGGCACGGCGCGCGAGGGCATCTTCGTCTTCCGCGACGGCCGGCTGATCGCGGCCAACCGCCACGGCCTCGGCCTGATGCAGCTCGACTGGTCGGCCCTCAACGCCCGCCGGCTCGACGAATTGTTCGCCCGGCCGCTCGCCGCCGAGGGCATCGTCCGATCCCGCGGCCGGCGCGGCGAGCCGCTGTTCGCGCGGCTGTCGCGCCCGCCCGCCCTGCCCTCCCCCGGGCCGGGCGCGCGCCGCGGGGCGGCCGCGGAGCCCTGGTTCGATCCGGCCGGCGAGGCCATGCTCGACCGGGCCCGCCGGCTGATCGACGCCGAGGTGCCGCTGCTCGTCACCGGCGAGACCGGCACCGGCAAGGAGATCTTCGCGCGCCGGCTGCACCAGCTCTCGGCCCGCGCCGGCGGCCCCTTCGTGCCGGTCAACTGCGCCGCCCTGCCGGAGAACCTGATCGAATCGGAACTGTTCGGCTATGCCGAGGGTGCCTTCACCGGCGCGCGCCGCCAGGGCGCCAGGGGCCTGGTGCGCGAGGCCGACAAGGGCATCCTCTTCCTCGACGAGATCGGCGACATGCCGCTCGCCATGCAGGCGCGGCTCCTGCGCGTGCTGCAGGACCGGCAGGTCAAGCCGCTCGGCGGCGGACCGGCGGTCACGGTCGACTTCGCGCTGGTCTGCGCCACCCACCGCGACCTCGCCGCCTTGACGGCGGCCGGCGCCTTCCGCTCCGACCTCTATTACCGGCTGGCGCAATATCCCTTCGAGATGCCGGCGCTGCGCACCCTGGCGGACCGCCGCGCCGTCATCGTACACCTCCTCGCCCAGCACCTGCCCGGGGCCTGGCTCGAGCCCGAGGCCGAGGCCGCCCTCGCCGCCTATGACTGGCCCGGCAATTTCCGCCAGCTCGCCGGCACGCTGCGCGCCCTCGCCGCCCTGCACCGGCCGGGCGAGCCGGTGACGGCCGACATGCTGCCGCAGCCGATCCGGGCCCATGCGGCCGCTGCCAGCGCCGCGGCGGCGCCGAGCCGGCTCGAAGACATCGAGCGCGACGCCATGCAGCGCGCCCTCGACCTCAACGCCGGCAATGTCTCGCGCGCCGCCCGCGCCCTCGGCGTCAACCGCAGCACGCTCTACCGTCGCCTGCGCCTGTCCTGA
PROTEIN sequence
Length: 610
MTSPSTTAPVEIARRQFFGEGRLPRAMVGAPIARSWQRCAALGLDIAAFPAIEPMTADEFRHVSACHERLRHVSRPELQTLRQEAQAMGSVVILTDPDGIILDTLGDAEFAGRAAQVALRPGVRWSEGGTGTNAIGTALYERRPIEVHGGEHYFETHAILTCAAAPIFDPQGRIAGALDLSGSALADHRYALGLVRMAVEQIEHRFFDEGFRDAEVVRFHTDPDLLGTAREGIFVFRDGRLIAANRHGLGLMQLDWSALNARRLDELFARPLAAEGIVRSRGRRGEPLFARLSRPPALPSPGPGARRGAAAEPWFDPAGEAMLDRARRLIDAEVPLLVTGETGTGKEIFARRLHQLSARAGGPFVPVNCAALPENLIESELFGYAEGAFTGARRQGARGLVREADKGILFLDEIGDMPLAMQARLLRVLQDRQVKPLGGGPAVTVDFALVCATHRDLAALTAAGAFRSDLYYRLAQYPFEMPALRTLADRRAVIVHLLAQHLPGAWLEPEAEAALAAYDWPGNFRQLAGTLRALAALHRPGEPVTADMLPQPIRAHAAAASAAAAPSRLEDIERDAMQRALDLNAGNVSRAARALGVNRSTLYRRLRLS*