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berkeley_reactor_200306_biofilm_scaffold_116353_6

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 5465..5878

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.6
  • Coverage: 136.0
  • Bit_score: 180
  • Evalue 1.00e-42
ribonuclease n=1 Tax=Rhizobium meliloti RepID=UPI00036796CE similarity UNIREF
DB: UNIREF100
  • Identity: 67.4
  • Coverage: 135.0
  • Bit_score: 183
  • Evalue 8.50e-44
PilT domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 136.0
  • Bit_score: 180
  • Evalue 2.00e-43

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Taxonomy

Ochrobactrum anthropi → Ochrobactrum → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 414
ATGATGGTCGTCCACAGCTCGGCTCTGATCGCCATTCTGTTCGATGAGCTGGAAGGACCGGATTGCACCAAGGCGCTTGAGGCAGCATCGTCCCGGTCGATTTCGGCCGTCAACTATGTGGAAACCGGAACTGTTCTTGCTGGCAGGCTCAGCAACGAACATCGGCCCGAGGCGATCCACATCCTTGACGATTTTCTAGCTACTCTGCGTATCGACATCGCGCCACTTGACGAAAGTCTCGCCCGCTCGGCGATGAAGGCCCGTCTCACCTTTGGCAAAGGCTTTGGTACTCGGGGAGGGCTGAATTTCGGCGGCTGCTTTGCCTATGCACTGGCGAAGAGCCATTCAGCCCCGCTCCTCTATGTTGGCGACGACTTCGCTCTGACTGACATCGAATCCGCTCTCGCGACTTGA
PROTEIN sequence
Length: 138
MMVVHSSALIAILFDELEGPDCTKALEAASSRSISAVNYVETGTVLAGRLSNEHRPEAIHILDDFLATLRIDIAPLDESLARSAMKARLTFGKGFGTRGGLNFGGCFAYALAKSHSAPLLYVGDDFALTDIESALAT*