ggKbase home page
Advanced Search
Search Help

berkeley_reactor_200306_biofilm_scaffold_141566_1

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(1..5148)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
RHS repeat-associated core domain protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KGE8_METEX similarity UNIREF
DB: UNIREF100
  • Identity: 35.6
  • Coverage: 936.0
  • Bit_score: 513
  • Evalue 7.70e-142
Uncharacterized protein {ECO:0000313|EMBL:EWC60583.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.3
  • Coverage: 978.0
  • Bit_score: 587
  • Evalue 3.40e-164
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 33.4
  • Coverage: 1014.0
  • Bit_score: 465
  • Evalue 5.20e-128

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Actinokineospora spheciospongiae → Actinokineospora → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 5148
ATGATCGAAGGTTTTGGCGCGGCTCGCGTGCGGGCCGGCGTGGCGCTGTCGTGTGCTGCGGCTGTGGCGGTGTGGCTGGGCGGCTGGGCGGCTCCCGCGATCGCTGAGAGCATCCAGGCGGCGGGTGTGCCGTCGCTGCGGACCGGACTGGTGGAGCAGCCTGTGCTCCCCTCCCTGCCGGCCGCTGGCCCGATCGCGGGTGCATTGCGGGCGCCGATGAGCGCTCCGATGCGGCTGATGGCGCAGGCGGATCCGAGCGTGCCGGATCCGTCCGCGCCGGCGCCGTCGAGCGATCCGGCCCCGTCCGATCCGAGCGATCCATCGAGCCCCACGGCCCAGACGCCGATCCCATCAGAAGACGCGCCCTCGACCACGGGCGCGGCACAGCCGGCGGAGGAGCAGGAAGCCGCGCCGGCCGCAGCCGCGGCGGCAGCAATCGACCTCGGTGGCGGCGACGCGACCGATCCGACTGCGGCACTGGCGGCGTCGAGCGGGTTGGCATCGAAGATCCAGCCAGCACCGTCGAACGGATCGTTCACGCAGCGCATTCCCCTTGCAGTCCCGACGTTTCGCGGCATCGAGCCGAACCTCGGTCTGGTCTACGATTCCAACGCCGGTGCCCGGGCGGGCGGCTGGTGGGCTGGCTTTGCCGGTGTGGGCATGCGGGTGTCGGGCCTGTCCGACATCACCCGCATCACCCATGGCGGCGGCACGCCGCGCTTCGACGATGCGCTGGATGTCTTCGCCCTGGACGGGGACGAACTGGTGGCCTGCGCGGCCGGCATGACCAGCCCGGCGTGCACCACGGGCACGGCCGGCACGGGCGTGACCACCTACGCCACGCGTGTGGAAGGCTTCGTCCGGGTGAAGCGCACGGTGGATGGGGTGAGCGGGGCGAGCACCTGGACGGTGACGGGCCGGGACGGGACGGTGTCGACCTATGCCTCGGTGTCGACCTCGACCTGGGGCGGTGTGGCCGATGCGGAGCTGCCGAAGCTGGCGAGCGAGGCGCGCTGGCTGCTGCAGCGCGTGACCGACGCGCATGGCAACCACATGGACTATGCCTATGCCTGCCCGGTGCTGCCGGTGTGCTGGCCGACGAGCATCCAATACGTCAACAACGGCGAGGCGGCGCCGGTTGCGACCATCACCTTCAACCGGGAGACGGCGCCGGCGAGCGCCGTGCTGACGCTGGCCAACGGCGGGGTGATGGCGCCGGCCGCGAACGGGACGATCCCCTCGACGGAGAAGTCGCTGTCGACGCTGGACCAACGGCTGACGTCGGTCGACGTGCAGTTCGCAGGCACTCGGGTGCGAGCCTATGACCTCGCGTACCAGCAGAGTGAGGCGACAGGGCTGTCGCGGCTGATCACGGTGACGCCCTATGGCAAGGACGCCAGCTTCACTGGCGGCCACGTCACTGGCGGTACCAGCCTGCCGCCGACCAAGCTCGCCTATCAGGGCGCGACGCTCGCATGGTCGAGCCCGCAGACGCTGCCTCTCACGCTGTCGATACAGCGCAATGCCGCTTCCTCCTCTCCAGCCCCATCCATCGCTGCCATCACCGATGCCAACGGCGATCAGAGGCCGGATACGTTTATTTTCAGCCCGGCCTCGTATCCGGCCTGCACGATACAGAGTCCGCCCCCGGCGGGACAGACGGTGTGCCCAACGGGGCCGCGTCCGCCGCAAAGCTGCTCGGTCTCGATATTCGCCAACAGCCTGTCGACGGCGCCTCAGCCCATCCCTCCATTCGTCTTCAACTGCTTATCCGAGCAGCTTGCGACATCGACCTGCGGCACGCGTCGCATCACGACGACCTCGGGTTTGAATGGCATACAAGACATCAATGGCGACGGTGTCCCTGATGTCCTTTACAGCTCGCGGACGTCTGATCCTGGCGACAGCTGCGGCAGTTCGGCGAAGACGACCTATTCAAGCGGTATCGGCGTAGCGCTTCTGTCGGCGACAGGCTCCGTCACCGCCGCCAGATTTGTCGGTTTCGACAATCCAAGCCAGATCCAGTTGCAGAGCCCGCCGCCGTTCCTTGGGCTGCTCGATTACGACGGCTCCGGACAGATACGCGCCCTGCTTGTGCAGGCCGATGGCACGACCGTACTCCGGAGCCTGACGATCCCCGATCCCACCACTATGCCCGACAGCAGTTGGACGCTTGAACAGAGACGGCAGTGGTTCCTGGATCAGATCAACGGTGGTTTTCAAGGAGGCTCCCAACCATCGGGCCCGGATGTCCCACTCTCGCTCTCATCCGTGTTCGCTTCCCCTTTGTTCCAGGACATGAACGGCGATGGTCGGAGCGATATCGTCCGGGTGGGCATGGGGAGCGGCCAGATCCAGGTAAACTACACCCTCTCGACGGGGACGGGGTTTTCGCCACAGCAGGTGGCGTATTTTCCCGGGGTCATCCAGACCAGCTATTGTGGCGGGCCCTCGGTCGCGCCCGGCGCGGATGGGACCGGCTTTGGCAAGATTCTCGCGTCAATCCGTGTCGCGGACGTCAACGGTGACGGCCGCTCGGACATCGTCATGCTGGAGAAGGGGGCGTCGGCCGGCACGGTGAATGTTGGGGTGCTGCTGTCGACGGGCCAAGGCTTCGTGCACCAGATTTGGGCCGCGAATGTCCCCTCCGAGATCGCGACCCGCTCGTCCGATCCGAACGGGCAATGCCTGTCGCCCATACTGGTCGGCGACATCGACGGCGACGGCCGCTCCGACATCATCCTGAACACGACGACCACGTCCTCGACGGTGTTTCGGTCGACCGGATCGAGCTTCGTCCCGGTCGCTACCCGCGGGCCGACCTATACACTACTTGACGTGGACGGTGATGGCAGGGACGACATCGCCCCTGCCCGGTTCTACGACACGTATTCCGGCGGTCCCTTGGTCGCCGAGTCTGACGGGACGTACGTTTCGGCGTCCGTTGCCTTCCCCGATCTCTTGACGTCCGTGACGGGTCCTTTGGGCGGCAAGACGACGATCGCCTACCAGCCGTCTTCGGGTGTTGTGCACGGCGTGATGCCGGGCGTGATGCAGGTTGTGAAGTCGCTGACGCTGAGCGACGGGCGGTCTGCGCCGTCGACGACGAGCTATAGCTTCGCGGGCGGGCTGTACAACGCTTCGGAGCGTCGGTTCCTCGGCTTCCGGACGGCGACGGCGGACCTTGCGTGCAATGCCGGGGAGACGGTGTGCCCGCGGCGGCGCTACACCTTCCGGCAGGACCTGGCGGCGGCGGGCCGGCTGGAGAGGCTGGAGGAGACGAGCACGGCGGCGGATGCGCCGGTGCTGGCGGTGACGCAGGAGACCTGGAGCGTGCGGGCCAAGGCGGGCAGCACCGCCGTGCTGAGTCCGGCCTGGCCGCTGCCCGCGGGCACGACGCTGACGCTGCCCTATACTGCGCTCAACACGGCCTCCGAGAAGCAGGCTCTGTTCGGTTCGGTGGTCAAGCGCAGCACGGTTGGTCGCGTCTATGATGCCTATGGCAACGTGACGGGTCTGACGGAGACCGGGGACGCGGACGTCACGGGGGGCGAGCGCTACACGCTGACCGCCTTCACGCCGAACCCGGAGGCCTACATCGTGTCGGCGCCGAACCGGGTGCGGACCTATGCGGGGACCACGAGCGCCGGCCCGCTGCTGGCCGACCAGGTGATCTACTATGACGCCAGCACGACGCTGGGGGCGGTGCCCGCGAAGGGCGACGTGACGCAGACCGGCCACCGTCCGCAGGCCTCGGGCAGCTGGTACCTGGCCAAGGCCGAGTACGACGCCTACGGCAACAAGACGGCAGTGATCGACGAGGTCGGCAACCGGACGGAGACGGTCTACGACACGGGCACGCACCTGCTGCCGGTGGAGGTGCGCAACGCCAAGGCCCAGAGCGTGGTCTCGGCCTACGACCTCGGGTGCCAGAAGCCGTCGACGATCACGGACCTCAACGGGCAGGTGACGACGTTCACCTATGACGCCCTGTGCCGGCTGACCGAGAAGAAGCCGCCGCTGAACGCCTTCGAGCGCTACACCTACTACAATGTCGGCAACCCGGCGACGCAGTATGTCGACGTGCGCAAGCCCGGCCCGACCGGGACGGCGACGATCTACACCAAGACCTACCTGGACGGCTTCGGTCGGACCTGGAGGGTGCTGGCGCAGGGGCCTGACACGACCCGTGTGATCACCACGCTGACCGACTACACCGCGCGGGGCAGCGTGGCGCGGGTGAGCCGGCCGTTCTACTCCGGTGACACGGCGCAATATACCAGCACGGCCTATGACGCGCTGGACCGTCCGGTTGTCGTGACCAACCCGGACGGCAGCGCCGCGAGCGTCGCCTATGGCGCCTCCAGCCTGACCGCGCTCTCCGGCTTCCTGACGGTGACGGCGACGGACGAGCTCGGGCGGCGCAGCATCGTGCACACCGACGCCTTCGGGCGGACGGTGCGCCAGACGCGGTTCCTGGGCACGAGCGAGGTCAACCGCTCGATGGTCTACGACGCGATGGGCCGGCTGACGCAGCTGACCGACCCGGCGGGCAATCAGTGGATCAACACCTTCGACAACATGGGCCGACGCACCCAGGTGCAGGACCCGGACCTCGGCACCTGGACCTATGCCTATGACGGGGCGGGCAATCTCACCCGCCAGACCGATGCCAAGGGCCAGCAGGTGGCGTTCCTCTACGATCCGCTGAACCGGGTGCGCAGCAAGATCGCCCATGCCGAGCTGCCGGTGAACGACCCGGGGCGGGACACCACCACCTACGCCTATGACGAGGCGCGGACCGGCTTCTTCAACGTCGGCAAGATGACGACCAGCACCAACGCGGCGGCGACGCTGACGGCGGACTACGACGTGCTGGGCCGGGAGGTGAAGAAGACGCTTGTCGTCGACGGACAGAGCTACATCACGACCACGGCCTACGACACCGGCTCGCGGGTGCTGTGGCGGGGCCTGCCGGACGGGACGACGGTGGGCACCGCCTCGTCGCCGATGACCTACGACCCGGCCGGCCGGCTGGTGTCGGTGCCCGGTCTCGTCACCGGCACGACCTATGACGCAGCCGGCCAGCCCCTGGTGACGAGCTATGCCAGCGGGGTGGTGTCGACGGCGACCTACGACCCGACCCGC
PROTEIN sequence
Length: 1716
MIEGFGAARVRAGVALSCAAAVAVWLGGWAAPAIAESIQAAGVPSLRTGLVEQPVLPSLPAAGPIAGALRAPMSAPMRLMAQADPSVPDPSAPAPSSDPAPSDPSDPSSPTAQTPIPSEDAPSTTGAAQPAEEQEAAPAAAAAAAIDLGGGDATDPTAALAASSGLASKIQPAPSNGSFTQRIPLAVPTFRGIEPNLGLVYDSNAGARAGGWWAGFAGVGMRVSGLSDITRITHGGGTPRFDDALDVFALDGDELVACAAGMTSPACTTGTAGTGVTTYATRVEGFVRVKRTVDGVSGASTWTVTGRDGTVSTYASVSTSTWGGVADAELPKLASEARWLLQRVTDAHGNHMDYAYACPVLPVCWPTSIQYVNNGEAAPVATITFNRETAPASAVLTLANGGVMAPAANGTIPSTEKSLSTLDQRLTSVDVQFAGTRVRAYDLAYQQSEATGLSRLITVTPYGKDASFTGGHVTGGTSLPPTKLAYQGATLAWSSPQTLPLTLSIQRNAASSSPAPSIAAITDANGDQRPDTFIFSPASYPACTIQSPPPAGQTVCPTGPRPPQSCSVSIFANSLSTAPQPIPPFVFNCLSEQLATSTCGTRRITTTSGLNGIQDINGDGVPDVLYSSRTSDPGDSCGSSAKTTYSSGIGVALLSATGSVTAARFVGFDNPSQIQLQSPPPFLGLLDYDGSGQIRALLVQADGTTVLRSLTIPDPTTMPDSSWTLEQRRQWFLDQINGGFQGGSQPSGPDVPLSLSSVFASPLFQDMNGDGRSDIVRVGMGSGQIQVNYTLSTGTGFSPQQVAYFPGVIQTSYCGGPSVAPGADGTGFGKILASIRVADVNGDGRSDIVMLEKGASAGTVNVGVLLSTGQGFVHQIWAANVPSEIATRSSDPNGQCLSPILVGDIDGDGRSDIILNTTTTSSTVFRSTGSSFVPVATRGPTYTLLDVDGDGRDDIAPARFYDTYSGGPLVAESDGTYVSASVAFPDLLTSVTGPLGGKTTIAYQPSSGVVHGVMPGVMQVVKSLTLSDGRSAPSTTSYSFAGGLYNASERRFLGFRTATADLACNAGETVCPRRRYTFRQDLAAAGRLERLEETSTAADAPVLAVTQETWSVRAKAGSTAVLSPAWPLPAGTTLTLPYTALNTASEKQALFGSVVKRSTVGRVYDAYGNVTGLTETGDADVTGGERYTLTAFTPNPEAYIVSAPNRVRTYAGTTSAGPLLADQVIYYDASTTLGAVPAKGDVTQTGHRPQASGSWYLAKAEYDAYGNKTAVIDEVGNRTETVYDTGTHLLPVEVRNAKAQSVVSAYDLGCQKPSTITDLNGQVTTFTYDALCRLTEKKPPLNAFERYTYYNVGNPATQYVDVRKPGPTGTATIYTKTYLDGFGRTWRVLAQGPDTTRVITTLTDYTARGSVARVSRPFYSGDTAQYTSTAYDALDRPVVVTNPDGSAASVAYGASSLTALSGFLTVTATDELGRRSIVHTDAFGRTVRQTRFLGTSEVNRSMVYDAMGRLTQLTDPAGNQWINTFDNMGRRTQVQDPDLGTWTYAYDGAGNLTRQTDAKGQQVAFLYDPLNRVRSKIAHAELPVNDPGRDTTTYAYDEARTGFFNVGKMTTSTNAAATLTADYDVLGREVKKTLVVDGQSYITTTAYDTGSRVLWRGLPDGTTVGTASSPMTYDPAGRLVSVPGLVTGTTYDAAGQPLVTSYASGVVSTATYDPTR