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berkeley_reactor_200306_biofilm_scaffold_141566_9

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(13799..14659)

Top 3 Functional Annotations

Value Algorithm Source
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Pseudomonas sp. GM84 RepID=J2Y5I5_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 71.2
  • Coverage: 271.0
  • Bit_score: 397
  • Evalue 7.80e-108
Peptide ABC transporter permease {ECO:0000313|EMBL:AHD15417.1}; TaxID=1259844 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FGI182.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.9
  • Coverage: 275.0
  • Bit_score: 397
  • Evalue 8.40e-108
binding-protein-dependent transport systems inner membrane component similarity KEGG
DB: KEGG
  • Identity: 69.2
  • Coverage: 286.0
  • Bit_score: 392
  • Evalue 9.30e-107

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Taxonomy

Pseudomonas sp. FGI182 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 861
ATGAGCGCATCCGAAGCCGGACTGCCCGCATCCGGCGCGGCCCGCCTCCGCATCCAGCGGCTGCCCGCCCTCGGACCCGCCCTGGCCGCGCTGTTCCTGGCCGCGCTCGTGCTGGCCTGCATCGCTCCGCAGCTCTTCACGCAGGTCAATCCGCTGGCGATCGCACCCAGGCAGGCCTTCCAGCCGCCGGGCTGGGCCCATCCCTTCGGCACCGACCAGTCGGGGCGGGATATCTATGCACGCGTCGTCTACGGCGCGCGGCAGTCGCTGCTGCTCGGGGTCGGCGCGGTCGCCCTGTCCATGGCGCTGGCCGTGGTGCTGGGCCTGGCGGGCGGACTCGCCGGCCGCCTCGCGGAACGGGCGGTCGGCTGGATCCTCGACGTCCTGTTCTCCTTCCCGACCATGATCCTGGCGCTGCTCTTCGGCGCCCATCTCGGCGACGGGCTGGTGCCGCTGGTGATCGCGACCGGCATCGGCAATGCGCCGGGCTATGCGCGCATGGTCTTCGGCCAGGTGCTGGCGGTGCGGCACGCCGGCTATATCGAGGCGGCCCGGGCCCTCGGCCACACGCCGGCGCGGACGATCCGCCGGCAGGTGCTGCCGAACGCCATGCGGCCCCTGATCGTGGCGATCACCATGGGCGTCGGGCAGGCCATCGTCTGGGCCTCGGCGCTGTCCTTCCTCGGCCTCGGCGCCCGGCCGCCGGCGGCGGAATGGGGCACGATGCTGTCGATGGGCCGCAATTTCGTGCAGCAGGCCTGGTGGCTGACCTTCTTTCCCGGGCTGGCGATCGTCCTGACCACGCTCGCCACCACCGTCTTCGGCCGCCACCTGCAACGCCTGATCGAGGGACGCGCCTGA
PROTEIN sequence
Length: 287
MSASEAGLPASGAARLRIQRLPALGPALAALFLAALVLACIAPQLFTQVNPLAIAPRQAFQPPGWAHPFGTDQSGRDIYARVVYGARQSLLLGVGAVALSMALAVVLGLAGGLAGRLAERAVGWILDVLFSFPTMILALLFGAHLGDGLVPLVIATGIGNAPGYARMVFGQVLAVRHAGYIEAARALGHTPARTIRRQVLPNAMRPLIVAITMGVGQAIVWASALSFLGLGARPPAAEWGTMLSMGRNFVQQAWWLTFFPGLAIVLTTLATTVFGRHLQRLIEGRA*