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berkeley_reactor_200306_biofilm_scaffold_141566_20

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: 26078..27091

Top 3 Functional Annotations

Value Algorithm Source
4-hydroxy-2-oxovalerate aldolase {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546}; Short=HOA {ECO:0000256|HAMAP-Rule:MF_01656};; EC=4.1.3.39 {ECO:0000256|HAMAP-Rule:MF_01656, ECO:0000256|SAAS:SAAS00035546};; 4-hydroxy-2-keto-pentanoic acid aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; 4-hydroxy-2-oxopentanoate aldolase {ECO:0000256|HAMAP-Rule:MF_01656}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.1
  • Coverage: 332.0
  • Bit_score: 568
  • Evalue 4.20e-159
4-hydroxy-2-oxovalerate aldolase n=1 Tax=Frankia sp. CN3 RepID=G6H6T2_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 332.0
  • Bit_score: 532
  • Evalue 2.40e-148
4-hydroxy-2-oxovalerate aldolase similarity KEGG
DB: KEGG
  • Identity: 76.2
  • Coverage: 332.0
  • Bit_score: 523
  • Evalue 4.10e-146

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Taxonomy

Agrobacterium rhizogenes → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1014
ATGGGCCGGCAGTTATACGTCCAGGACGTCACGCTGCGGGACGGCATGCATGCGCTGCGGCATCGCATGGCGCCGGAGACGCTGCGGACCATCGTCAAGGCGCTCGACCGGGCGGGAGTCGCCTCGATCGAGGTCAGCCATGGCGACGGGCTGGCCGGGGCGAGCCTCAACTACGGTCCCGGCTCGCACACCGACTGGGCCTGGATCGAAGCCGCGGTCGAGGCGGCGGAAAAGGCGGTGATCGCCACGCTGCTGCTGCCGGGGGTCGGCACGATCGCCGAGCTCAGGCGCGCCCATGCGCTCGGCGTGCGCTCCGTTCGCGTCGCCACGCACTGCACCGAGGCGGACGTCGCGGCCCAGCACATCGCCGAGGCGCGCAAGCTCGGCATGGACGTGGCGGCCTTCCTGATGATGGCGCACATGATCGGGCCGGCAGACCTCGCAAAGCAGGCGCTGCTGATGCAGTCCTACGGGGCGCATTGCGTCTACATCACCGACTCGGCGGGGCGATTGACCACCAACGACGTCCGCGAGCGGGTGCGGGCCTACCGGGACGTGCTCGATCCGATGACTCAGGTCGGGATCCACTGCCACGAGAACCTCTCGCTCGGCGTGGCGAATTCCGTCGCGGCGATCGAGGAAGGCGCATACCGCATCGACGCGTCCCTCGCCGGGCACGGCGCCGCGGCGGGCAACACCCCGCTCGAGGCGTTCGTCGCCGTCGCCAACCTCCTGGGCTGGGACACCGGCTGCGATCTCTTCGCGCTCGAGGACGCGGCCGACGACCTCGTCCGCCCACTGCAGGACCGTCCCGTGCGGGTCGACCGGCAGACCCTCACCATCGGCTATGCCGGCGTCTACGGCAGCTTCCTGCGCCATGCCGAGAACGCCGCCCGGGACTATGGCGTCGACGCCCGCGAGATCCTGATCGAGGCGGGGCGGCGCAAGCTCGTCGGCGGCCAGGAAGACATGCTCACCGACATCGCCCTCAATCTCCGCGCGGCGGCGTCGTAG
PROTEIN sequence
Length: 338
MGRQLYVQDVTLRDGMHALRHRMAPETLRTIVKALDRAGVASIEVSHGDGLAGASLNYGPGSHTDWAWIEAAVEAAEKAVIATLLLPGVGTIAELRRAHALGVRSVRVATHCTEADVAAQHIAEARKLGMDVAAFLMMAHMIGPADLAKQALLMQSYGAHCVYITDSAGRLTTNDVRERVRAYRDVLDPMTQVGIHCHENLSLGVANSVAAIEEGAYRIDASLAGHGAAAGNTPLEAFVAVANLLGWDTGCDLFALEDAADDLVRPLQDRPVRVDRQTLTIGYAGVYGSFLRHAENAARDYGVDAREILIEAGRRKLVGGQEDMLTDIALNLRAAAS*