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berkeley_reactor_200306_biofilm_scaffold_151446_9

Organism: 2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Location: comp(10598..11662)

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4PP14_9CAUL similarity UNIREF
DB: UNIREF100
  • Identity: 39.3
  • Coverage: 356.0
  • Bit_score: 215
  • Evalue 6.80e-53
Putative alginate lyase {ECO:0000313|EMBL:GAK69938.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.0
  • Coverage: 343.0
  • Bit_score: 398
  • Evalue 6.10e-108
algL; alginate lyase; Poly(beta-D-mannuronate) lyase similarity KEGG
DB: KEGG
  • Identity: 34.0
  • Coverage: 362.0
  • Bit_score: 163
  • Evalue 8.70e-38

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Taxonomy

Agrobacterium rubi → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1065
ATGCTTCGGCTGTTCGCCTGCATGCTGCTGGCGGGGCTCGTGGCCGGCACCGCCTGCCGGGCCGCGGAGATCCGGCTGCCTTTCGCGCCGCGCCCGCCGTCGGACGCGTCCGCCCCGGAGACTTGCTCTGCGCCGCCGCCGCCCGTGACGGTCCTGGCGGTGGTCTCCAAGTACGGCGATGACGGGCCGCGGCGCGACACGGTCGATCCCGCCGCGGACGCCCGGTTCGAGGCCGAGATCGCGCCGGTCCGCGCCTATGTCCGGAGCGTGGTCGAGATGGCGAATGGCTATCGGCGCAGCGGCGACCCCGGCACGGCGCGATGCGCTCTCGCCTGGCTCGCCGCCTGGGCGGGCGCGGACGCCCTGTCGCAGGCCGAGAACCCCAACAGCCAGTTCCAGCGTGCCGAGGCCCTGTCCGGGCTCGGCTTGGCCCTGCTGCAGATCGCGCCGGCGGTCCGCGTCGATCCGCGCTATGCCGCCGCGGCGGCCTGGATGGCGCGGCTGGCCGCCGCGACCGACGGATTCTTCGACGCCACGCGCGAGAAGCTCAAGGGCTCGCGCAACAATCACGCCTATTGGGCGGCGCTGGCCTCGGCCGCCGCGGCCGCTGCGGTCGGCGACCAGGCGCTGCTGGACTGGTCGGTCGAGGTCTATCGGACCGCCGTCTGCGGGGCCACGCCGGCGGGCGCTCTGCCGCTGGAGCTGGGGCGCGGCAAGAAGGCGCTCGCCTATCATCTCTTCGCCCTGAGCGCGCTGGTGCCGGTCGCCGCCTTCGCGCAGGCCAACGGCATCGACGCCTTCGGCTTCTGCGACGGGGCGCTGCACCGCATCGTGCGCTTCAGCCTCGACGCCCTCGCTGATCCGCACGCCGTCGCCGTCCTGGCGGATGCGCCGCAGGACGGCTATGCCGGCGGCCTGCCGACGGGCGGCGAGGTCGCCTTCCTGGAGATCTATCATCGCGCCTTTCCCGGGCGGGCGCCGCTGGAAGCCCGGCTGCTCGCCCTGCGGCCGTTGAAGAGCACGGCGCTCGGCGGCGACCAGACCCTGCTCTACGGCGGACGCTAG
PROTEIN sequence
Length: 355
MLRLFACMLLAGLVAGTACRAAEIRLPFAPRPPSDASAPETCSAPPPPVTVLAVVSKYGDDGPRRDTVDPAADARFEAEIAPVRAYVRSVVEMANGYRRSGDPGTARCALAWLAAWAGADALSQAENPNSQFQRAEALSGLGLALLQIAPAVRVDPRYAAAAAWMARLAAATDGFFDATREKLKGSRNNHAYWAALASAAAAAAVGDQALLDWSVEVYRTAVCGATPAGALPLELGRGKKALAYHLFALSALVPVAAFAQANGIDAFGFCDGALHRIVRFSLDALADPHAVAVLADAPQDGYAGGLPTGGEVAFLEIYHRAFPGRAPLEARLLALRPLKSTALGGDQTLLYGGR*