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berkeley_reactor_200306_planktonic_scaffold_346475

Search features with annotation key words

Displaying items 31-60 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_346475_31
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

49612..50700
DNA (1089bp) protein (363aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH27_SINAD
hydrogenase expression/formation protein HypE
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:AGA28679.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_32
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

50719..51792
DNA (1074bp) protein (358aa)
Ni,Fe-hydrogenase I small subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIJ6_SINAD
Ni,Fe-hydrogenase I small subunit
Ni,Fe-hydrogenase I small subunit {ECO:0000313|EMBL:AGA28680.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_33
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

51811..53616
DNA (1806bp) protein (602aa)
hydrogenase n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000377FCF0
Ni,Fe-hydrogenase I large subunit {ECO:0000313|EMBL:AGA28681.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Ni,Fe-hydrogenase I large subunit
berkeley_reactor_200306_planktonic_scaffold_346475_34
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

53847..54422
DNA (576bp) protein (192aa)
Thioredoxin-like protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHE4_SINAD
thioredoxin-like protein
Thioredoxin-like protein {ECO:0000313|EMBL:AGA28682.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_35
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

54419..55090
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIN9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28683.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_36
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

55083..55736
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DH32_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28684.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_37
Medicago truncatula, Medicago, Fabales, rosids, Streptophyta, Viridiplantae

Not on your lists

55733..56722
DNA (990bp) protein (330aa)
Hydrogenase expression/formation protein hupD n=1 Tax=Medicago truncatula RepID=G7ZV73_MEDTR
Hydrogenase expression/formation protein hupD {ECO:0000313|EMBL:AES83111.1}; TaxID=3880 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago.;" source="Medicago truncatula (Barrel medic) (Medicago tribuloides).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_346475_38
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56788..57093
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q7WXP9_CUPNH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAP85822.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
berkeley_reactor_200306_planktonic_scaffold_346475_39
Medicago truncatula, Medicago, Fabales, rosids, Streptophyta, Viridiplantae

Not on your lists

57090..57680
DNA (591bp) protein (197aa)
Hydrogenase expression/formation protein hupD n=1 Tax=Medicago truncatula RepID=G7ZV73_MEDTR
Hydrogenase expression/formation protein hupD {ECO:0000313|EMBL:AES83111.1}; TaxID=3880 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago.;" source="Medicago truncatula (Barrel medic) (Medicago tribuloides).;"
hydrogenase maturation protease
berkeley_reactor_200306_planktonic_scaffold_346475_40
unknown

Not on your lists

57653..57772
DNA (120bp) protein (40aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_346475_41
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

58062..58391
DNA (330bp) protein (110aa)
Zn finger protein HypA/HybF (Possibly regulating hydrogenase expression) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DHE9_SINAD
Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)
Zn finger protein HypA/HybF (Possibly regulating hydrogenase expression) {ECO:0000313|EMBL:AGA28687.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_42
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

58392..59243
DNA (852bp) protein (284aa)
Hydrogenase accessory protein HypB n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIP4_SINAD
hydrogenase nickel incorporation protein HypB
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:AGA28688.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_43
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

59449..60828
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DIX4_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA28768.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_44
unknown

Not on your lists

61058..61840
DNA (783bp) protein (261aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_346475_45
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(62110..64545)
DNA (2436bp) protein (812aa)
WD40 repeat-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDT4_SINAD
WD40 repeat-containing protein
WD40 repeat-containing protein {ECO:0000313|EMBL:AGA27392.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_46
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

64853..65377
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3CDE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIE87857.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_346475_47
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65456..65818
DNA (363bp) protein (121aa)
DGPF domain-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MV09_CORCM
DGPF domain-containing protein
DGPF domain-containing protein {ECO:0000313|EMBL:AFE03295.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
berkeley_reactor_200306_planktonic_scaffold_346475_48
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

65818..67089
DNA (1272bp) protein (424aa)
Putative sigma factor, ECF subfamily n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1III6_KORVE
RNA polymerase ECF-subfamily sigma factor
Putative sigma factor, ECF subfamily {ECO:0000313|EMBL:ABF43314.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
berkeley_reactor_200306_planktonic_scaffold_346475_49
unknown

Not on your lists

comp(67189..67422)
DNA (234bp) protein (78aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_346475_50
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

67806..68294
DNA (489bp) protein (163aa)
Transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJL7_SINAD
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGA29579.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_51
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

68462..69067
DNA (606bp) protein (202aa)
FMN-dependent NADH-azoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; EC=1.7.-.- {ECO:0000256|HAMAP-Rule:MF_01216};; Azo-dye reductase {ECO:0000256|HAMAP-Rule:MF_01216}; FMN-dependent NADH-azo compound oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01216}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
FMN-dependent NADH-azoreductase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JCP0_HYPSM
azoR; FMN-dependent NADH-azoreductase
berkeley_reactor_200306_planktonic_scaffold_346475_52
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

69319..70155
DNA (837bp) protein (279aa)
Uncharacterized protein family (UPF0153) n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPN8_SINAD
hypothetical protein
Uncharacterized protein family (UPF0153) {ECO:0000313|EMBL:AGA31339.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_53
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

70293..71882
DNA (1590bp) protein (530aa)
Phosphodiesterase/alkaline phosphatase D n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D9G2_SINAD
phosphodiesterase/alkaline phosphatase D
Phosphodiesterase/alkaline phosphatase D {ECO:0000313|EMBL:AGA25296.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_54

Not on your lists

72056..73435
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3F2F
Uncharacterized protein {ECO:0000313|EMBL:KKN79456.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
inlA; hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_346475_55
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

73724..74146
DNA (423bp) protein (141aa)
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DPU9_SINAD
PAS domain-containing protein
PAS domain S-box {ECO:0000313|EMBL:AGA31384.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_346475_56
Rhodonellum psychrophilum, Rhodonellum, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

74503..75783
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Rhodonellum psychrophilum GCM71 = DSM 17998 RepID=U5BZB7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ERM82011.1}; TaxID=1123057 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodonellum.;" source="Rhodonellum psychrophilum GCM71 = DSM 17998.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_346475_57
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76060..76653
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002DD7C77
Uncharacterized protein {ECO:0000313|EMBL:EKS41096.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_346475_58
unknown

Not on your lists

comp(76971..78359)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030E8297
berkeley_reactor_200306_planktonic_scaffold_346475_59
unknown

Not on your lists

comp(78502..78894)
DNA (393bp) protein (131aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_346475_60
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(78919..79905)
DNA (987bp) protein (329aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DDW6_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA26851.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Displaying items 31-60 of 70 in total

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