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berkeley_reactor_200306_planktonic_scaffold_30796

Search features with annotation key words

Displaying items 91-120 of 152 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_30796_91
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(147079..148098)
DNA (1020bp) protein (340aa)
4-hydroxythreonine-4-phosphate dehydrogenase (EC:1.1.1.262)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNR3_OPITP
berkeley_reactor_200306_planktonic_scaffold_30796_92
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(148095..149006)
DNA (912bp) protein (304aa)
Dihydrodipicolinate synthase n=1 Tax=Prevotella sp. CAG:1058 RepID=R5CSP0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AKC82232.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_93

Not on your lists

comp(149015..150160)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035F81A7
Marine sediment metagenome DNA, contig: S01H1_C00355 {ECO:0000313|EMBL:GAF76071.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
adh; alcohol dehydrogenase
berkeley_reactor_200306_planktonic_scaffold_30796_94
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(150157..151737)
DNA (1581bp) protein (527aa)
SSS sodium solute transporter superfamily n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V3H8_TERSS
SSS sodium solute transporter superfamily protein
SSS sodium solute transporter superfamily {ECO:0000313|EMBL:ADV83591.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
berkeley_reactor_200306_planktonic_scaffold_30796_95
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(151742..153565)
DNA (1824bp) protein (608aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036DD694
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
berkeley_reactor_200306_planktonic_scaffold_30796_96
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

153749..155173
DNA (1425bp) protein (475aa)
L-fucose isomerase, C-terminal domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCW5_9BACT
fucose isomerase
Fucose isomerase {ECO:0000313|EMBL:AKC81847.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_97
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

155176..156270
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036E2EFE
hypothetical protein
Tax=RBG_13_Planctomycetes_60_9_curated
berkeley_reactor_200306_planktonic_scaffold_30796_98
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

156267..157427
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLF7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59360.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_30796_99
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

157455..158291
DNA (837bp) protein (279aa)
Transketolase domain-containing protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YHP9_9SPHI
transketolase
Transketolase {ECO:0000313|EMBL:AKC81848.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_100
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

158449..159450
DNA (1002bp) protein (334aa)
Transketolase, pyridine binding domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JCW3_9BACT
transketolase
Transketolase {ECO:0000313|EMBL:AKC83852.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
berkeley_reactor_200306_planktonic_scaffold_30796_101
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

159802..161274
DNA (1473bp) protein (491aa)
glycerol kinase n=1 Tax=Chloroflexi bacterium oral taxon 439 RepID=UPI0003B76F12
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
berkeley_reactor_200306_planktonic_scaffold_30796_102
GWF2_RBX1_38_17_curated, RBX1, Bacteria

Not on your lists

comp(161487..161765)
DNA (279bp) protein (93aa)
UPF0345 protein SPV1_13137 id=1894564 bin=GWE2_RBX1_39_32 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWE2_RBX1_39_32 organism_group=RBX1 organism_desc=Based on recA, related to OP9; concatenated rp tree places basal to Cyanobacteria and Melainabacteria
hypothetical protein
Tax=GWF2_RBX1_38_17_curated
berkeley_reactor_200306_planktonic_scaffold_30796_103
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

162083..162934
DNA (852bp) protein (284aa)
ferredoxin-NADP reductase (EC:1.18.1.2)
NADH-dependent ferredoxin:NADP+ oxidoreductase, beta subunit id=4786404 bin=GWC2_Chloroflexi_73_18 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_30796_104
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

162936..164348
DNA (1413bp) protein (471aa)
NADH-dependent ferredoxin:NADP+ oxidoreductase, alpha subunit id=4786403 bin=GWC2_Chloroflexi_73_18 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
nfnA; dihydropyrimidine dehydrogenase subunit A
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_30796_105
unknown

Not on your lists

164386..164532
DNA (147bp) protein (49aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_106
R_OP3X_51_18, OP3X, Bacteria

Not on your lists

164724..169334
DNA (4611bp) protein (1537aa)
glutamate synthase n=1 Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B5D3C6
glutamate synthase family protein
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
berkeley_reactor_200306_planktonic_scaffold_30796_107
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

169365..170849
DNA (1485bp) protein (495aa)
NADH/NADPH-dependent glutamate synthase small subunit n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WCP1_9CYAN
NADH/NADPH-dependent glutamate synthase small subunit
NADH/NADPH-dependent glutamate synthase small subunit {ECO:0000313|EMBL:AFZ17302.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
berkeley_reactor_200306_planktonic_scaffold_30796_108
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(170819..171397)
DNA (579bp) protein (193aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XG93_9BACT
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EEF61255.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_30796_109
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

171541..171873
DNA (333bp) protein (111aa)
Response regulator receiver protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XEA1_9BACT
Response regulator receiver protein {ECO:0000313|EMBL:EEF61992.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_110
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

172032..172241
DNA (210bp) protein (70aa)
Cold-shock DNA-binding domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE99_9BACT
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EEF61990.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
cold-shock protein
berkeley_reactor_200306_planktonic_scaffold_30796_111
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

172294..173487
DNA (1194bp) protein (398aa)
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EEF61989.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EEF61989.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
coproporphyrinogen III oxidase, anaerobic (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE98_9BACT
berkeley_reactor_200306_planktonic_scaffold_30796_112
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(173663..174007)
DNA (345bp) protein (115aa)
Pyrrolo-quinoline quinone n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLK5_9BACT
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:EEF59253.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_30796_113
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(174186..174968)
DNA (783bp) protein (261aa)
Hemolysin-coregulated protein (Uncharacterized) n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YB67_THIV6
putative type VI secretion system effector hcp1 - like protein
Putative type VI secretion system effector hcp1-like protein {ECO:0000313|EMBL:AIC16927.1}; TaxID=926571 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
berkeley_reactor_200306_planktonic_scaffold_30796_114
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(174986..175540)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83983.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_30796_115
unknown

Not on your lists

175581..175697
DNA (117bp) protein (39aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_30796_116
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(175863..176810)
DNA (948bp) protein (316aa)
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Ribonuclease HIII n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP6_9BACT
rnhC; ribonuclease HIII
berkeley_reactor_200306_planktonic_scaffold_30796_117
Anabaena sp. 90, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

177044..178591
DNA (1548bp) protein (516aa)
HEAT-repeat-containing PBS lyase n=1 Tax=Anabaena sp. 90 RepID=K7VU32_9NOST
HEAT-repeat-containing PBS lyase
HEAT-repeat-containing PBS lyase {ECO:0000313|EMBL:AFW93655.1}; TaxID=46234 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena sp. 90.;"
berkeley_reactor_200306_planktonic_scaffold_30796_118
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(179032..182034)
DNA (3003bp) protein (1001aa)
Immunoglobulin subtype n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSH4_9BACT
Immunoglobulin subtype {ECO:0000313|EMBL:EEF57206.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lysyl endopeptidase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_30796_119
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

182167..183369
DNA (1203bp) protein (401aa)
A/G-specific adenine glycosylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFP7_9BACT
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EEF61411.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
A/G-specific adenine glycosylase
berkeley_reactor_200306_planktonic_scaffold_30796_120
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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183366..184502
DNA (1137bp) protein (379aa)
Aminotransferase class V n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBR8_9BACT
Aminotransferase class V {ECO:0000313|EMBL:EDY16097.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aminotransferase
Displaying items 91-120 of 152 in total

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