ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_207894

Search features with annotation key words

Displaying items 31-48 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_207894_31
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(30236..31405)
DNA (1170bp) protein (390aa)
Aminodeoxyfutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993}; Short=AFL synthase {ECO:0000256|HAMAP-Rule:MF_00993};; Short=Aminofutalosine synthase {ECO:0000256|HAMAP-Rule:MF_00993};; EC=2.5.1.120 {ECO:0000256|HAMAP-Rule:MF_00993};; Menaquinone biosynthetic enzyme MqnE {ECO:0000256|HAMAP-Rule:MF_00993}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCT7_9BACT
thiH; thiamine biosynthesis enzyme ThiH or related uncharacterized enzyme
berkeley_reactor_200306_planktonic_scaffold_207894_32
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

Not on your lists

32283..33047
DNA (765bp) protein (255aa)
response regulator receiver modulated metal dependent phosphohydrolase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
berkeley_reactor_200306_planktonic_scaffold_207894_33
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33232..33987)
DNA (756bp) protein (252aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS54_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF57309.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_207894_34
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(33984..34781)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS55_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57310.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_207894_35
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(34796..35620)
DNA (825bp) protein (275aa)
Peptidoglycan-binding LysM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XS56_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EEF57311.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptidoglycan-binding lysin domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_207894_36
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35794..36234
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Halomonas sp. GFAJ-1 RepID=H0J389_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ETW99504.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_207894_37
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

36484..36804
DNA (321bp) protein (107aa)
Transcriptional regulator PadR-like n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NWZ4_9DELT
PadR family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
berkeley_reactor_200306_planktonic_scaffold_207894_38
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

36830..37300
DNA (471bp) protein (157aa)
DoxX family protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNT6_OPITP
DoxX family protein
DoxX family protein {ECO:0000313|EMBL:ACB75456.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_207894_39
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37293..38072
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UC01_ANASK
hypothetical protein
Tax=BJP_IG2069_Syntrophobacterales_46_30
berkeley_reactor_200306_planktonic_scaffold_207894_40
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

38069..39277
DNA (1209bp) protein (403aa)
Chromate transporter, chromate ion transporter (CHR) family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNT5_OPITP
chromate transporter
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:ACB75455.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_207894_41
unknown

Not on your lists

comp(39369..39995)
DNA (627bp) protein (209aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_207894_42
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

40713..41237
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJP6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59922.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
membrane protein
berkeley_reactor_200306_planktonic_scaffold_207894_43
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

41234..41839
DNA (606bp) protein (202aa)
Putative uncharacterized protein n=1 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=B5YK27_THEYD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI21968.1}; TaxID=289376 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
berkeley_reactor_200306_planktonic_scaffold_207894_44
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41851..42441
DNA (591bp) protein (197aa)
Protein tyrosine/serine phosphatase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHV7_RHITR
protein tyrosine/serine phosphatase
Protein tyrosine/serine phosphatase {ECO:0000313|EMBL:AGB71003.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
berkeley_reactor_200306_planktonic_scaffold_207894_45
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42705..43442
DNA (738bp) protein (246aa)
Single-strand selective monofunctional uracil DNA glycosylase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q2G0_9RHOO
smuG; single-strand selective monofunctional uracil DNA glycosylase
Single-strand selective monofunctional uracil DNA glycosylase {ECO:0000313|EMBL:BAL26819.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
berkeley_reactor_200306_planktonic_scaffold_207894_46
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

43483..43722
DNA (240bp) protein (80aa)
glutamate
Uncharacterized protein {ECO:0000313|EMBL:KDA54533.1}; TaxID=1312852 species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Zinc finger CDGSH-type domain protein id=4497809 bin=GWF2_Bacteroidetes_41_31 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Bacteroidetes_41_31 organism_group=Bacteroidetes
berkeley_reactor_200306_planktonic_scaffold_207894_47
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(43723..44538)
DNA (816bp) protein (272aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925, ECO:0000256|RuleBase:RU003903};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Pyrroline-5-carboxylate reductase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKF3_9BACT
pyrroline-5-carboxylate reductase
berkeley_reactor_200306_planktonic_scaffold_207894_48
unknown

Not on your lists

comp(44641..44733)
DNA (93bp) protein (31aa)

This feature has no annotations

Displaying items 31-48 of 48 in total

View Taxonomy