name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_planktonic_scaffold_207894_1 |
Not on your lists |
comp(82..2772)
|
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000371C194
Putative TPR repeat-containing protein {ECO:0000313|EMBL:ACX33953.1}; TaxID=672204 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote EC6.;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_2
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
2969..3598
|
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAV3_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF63138.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ECF subfamily RNA polymerase sigma-24 subunit
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_3 |
Not on your lists |
comp(3620..4066)
|
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THJ3_NIAKG
Marine sediment metagenome DNA, contig: S06H3_S11715 {ECO:0000313|EMBL:GAI38681.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
4171..5826
|
Excinuclease ABC C subunit domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGZ6_9BACT
UvrABC system protein C {ECO:0000256|SAAS:SAAS00125834}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
excinuclease ABC C subunit domain protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_5
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
5912..6316
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH00_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60921.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
6441..7349
|
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMC0_9BACT
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_7
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7614..9917
|
Glycosyl hydrolase family 88 n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PHG3_9BURK
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ELX11100.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
glycosyl hydrolase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_8
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria
|
Not on your lists |
10046..10408
|
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZR74_OPITP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_9
unknown
|
Not on your lists |
11066..12394
|
This feature has no annotations |
|
berkeley_reactor_200306_planktonic_scaffold_207894_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
12468..13505
|
Radical SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XK44_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EEF59867.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA repair photolyase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13711..14202)
|
Free methionine-R-sulfoxide reductase {ECO:0000313|EMBL:KFC75359.1}; EC=1.8.4.14 {ECO:0000313|EMBL:KFC75359.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H121_9SPHN
hypothetical protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_12
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
14296..15285
|
Tyrosine recombinase XerC n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMB7_9BACT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
tyrosine recombinase XerD subunit
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(15354..15653)
|
Stress responsive alpha-beta barrel domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMB6_9BACT
Stress responsive alpha-beta barrel domain protein {ECO:0000313|EMBL:EEF58958.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
stress responsive protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_14
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria
|
Not on your lists |
15734..16294
|
Phosphatidylethanolamine-binding protein n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LR74_SYNAS
phosphatidylethanolamine-binding protein
Tax=RBG_16_Chloroflexi_63_12_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
16450..17379
|
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Malonyl CoA-acyl carrier protein transacylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSP9_9BACT
malonyl CoA-acyl carrier protein transacylase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_16 |
Not on your lists |
17480..18223
|
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-N20 RepID=UPI00037A589A
3 oxoacyl acyl carrier protein synthase {ECO:0000313|EMBL:ADD93465.1}; TaxID=743051 species="Bacteria; environmental samples.;" source="uncultured marine bacterium MedDCM-OCT-S04-C123.;"
3-oxoacyl-ACP synthase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_17
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
18354..18599
|
Acyl carrier protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSV5_9BACT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
acpP; acyl carrier protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
18666..19925
|
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
fabF; 3-oxoacyl-ACP synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSV4_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(19968..20873)
|
Peptidoglycan-binding LysM n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSR2_9BACT
Peptidoglycan-binding LysM {ECO:0000313|EMBL:EEF57114.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
20941..22371
|
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:EEF57089.1}; EC=2.4.2.4 {ECO:0000313|EMBL:EEF57089.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
thymidine phosphorylase (EC:2.4.2.4)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSV2_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_21
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(22394..23098)
|
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01200, ECO:0000256|RuleBase:RU000512};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01200}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSV1_9BACT
orotidine 5'-phosphate decarboxylase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_22
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
23190..24482
|
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSU7_9BACT
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24485..24805
|
Transporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIQ8_9GAMM
Transporter {ECO:0000313|EMBL:EIL99349.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SugE protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_24
RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24828..25424)
|
Putative uncharacterized protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G5Q0_GEOUR
hypothetical protein
Tax=RIFOXYD12_FULL_Deltaproteobacteria_56_24_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
25639..26766
|
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Histidinol-phosphate aminotransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSU6_9BACT
histidinol-phosphate aminotransferase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
26810..27625
|
AAA ATPase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSU4_9BACT
AAA ATPase {ECO:0000313|EMBL:EEF57081.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATPase
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_27
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
27622..28164
|
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSU3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57080.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_28
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
28169..28873
|
CAAX prenyl protease-related protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSU2_9BACT
CAAX prenyl protease-related protein {ECO:0000313|EMBL:EEF57079.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
abortive infection protein
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_29
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
comp(28906..29589)
|
S-adenosylmethionine-binding protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036427F0
MT-A70 family protein
Tax=GWF2_Verrucomicrobia_62_7_curated
|
|
berkeley_reactor_200306_planktonic_scaffold_207894_30
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria
|
Not on your lists |
comp(29576..30166)
|
Restriction endonuclease BglII id=7201252 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
Restriction endonuclease BglII
Tax=RIFOXYC12_FULL_TA06_54_24_curated
|