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berkeley_reactor_200306_planktonic_scaffold_253396

Search features with annotation key words

Displaying items 61-90 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_253396_61
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(74248..75513)
DNA (1266bp) protein (422aa)
CinA-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHJ1_9BACT
CinA-like protein {ECO:0000256|HAMAP-Rule:MF_00226}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
competence/damage-inducible protein CinA
berkeley_reactor_200306_planktonic_scaffold_253396_62
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75616..76473)
DNA (858bp) protein (286aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00037C9E9A
Uncharacterized protein {ECO:0000313|EMBL:CDI03547.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_63
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

76636..77139
DNA (504bp) protein (168aa)
TPR repeat-containing protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XHA4_9BACT
TPR repeat-containing protein {ECO:0000313|EMBL:EEF60739.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

77198..77986
DNA (789bp) protein (263aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH96_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF60731.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_253396_65

Not on your lists

78153..78545
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZP17_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49398.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_66
unknown

Not on your lists

79412..79939
DNA (528bp) protein (176aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_253396_67
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(80229..81629)
DNA (1401bp) protein (467aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9N0_9BACT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EEF63274.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
major facilitator superfamily MFS_1
berkeley_reactor_200306_planktonic_scaffold_253396_68
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(82127..83866)
DNA (1740bp) protein (580aa)
Putative ABC transporter, permease protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBL2_9BACT
Putative ABC transporter, permease protein {ECO:0000313|EMBL:EEF62897.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_253396_69
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83863..84630)
DNA (768bp) protein (256aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBL3_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF62898.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter-like protein
berkeley_reactor_200306_planktonic_scaffold_253396_70
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

84806..85642
DNA (837bp) protein (279aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
purine nucleoside phosphorylase (EC:2.4.2.-)
Purine nucleoside phosphorylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR6_9BACT
berkeley_reactor_200306_planktonic_scaffold_253396_71
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

85623..86021
DNA (399bp) protein (133aa)
Cytidine deaminase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR5_9BACT
Cytidine deaminase {ECO:0000313|EMBL:EEF59941.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Cdd; cytidine deaminase
berkeley_reactor_200306_planktonic_scaffold_253396_72
RLO_RIF05_58_11, RIF5, Bacteria

Not on your lists

86074..87594
DNA (1521bp) protein (507aa)
Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NRZ0_9DELT
PAS/PAC sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
berkeley_reactor_200306_planktonic_scaffold_253396_73
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

87622..88503
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR3_9BACT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEF59939.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
LysR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_253396_74
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(88629..89738)
DNA (1110bp) protein (370aa)
Peptidase M29 aminopeptidase II n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJR2_9BACT
Peptidase M29 aminopeptidase II {ECO:0000313|EMBL:EEF59938.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
aminopeptidase
berkeley_reactor_200306_planktonic_scaffold_253396_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

89821..91746
DNA (1926bp) protein (642aa)
O-antigen polymerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG9_9BACT
O-antigen polymerase {ECO:0000313|EMBL:EEF62854.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
O-antigen polymerase
berkeley_reactor_200306_planktonic_scaffold_253396_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

91841..92647
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62853.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_253396_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

92732..94990
DNA (2259bp) protein (753aa)
Adenylate/guanylate cyclase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG7_9BACT
Adenylate/guanylate cyclase {ECO:0000313|EMBL:EEF62852.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
adenylate cyclase
berkeley_reactor_200306_planktonic_scaffold_253396_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

95047..95532
DNA (486bp) protein (162aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG6_9BACT
berkeley_reactor_200306_planktonic_scaffold_253396_79
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

95563..96042
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62850.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
metal-binding protein
berkeley_reactor_200306_planktonic_scaffold_253396_80
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


96089..96235
DNA (147bp) protein (49aa)
50S ribosomal protein L32 n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5GF58_GEOUR
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=351605 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
berkeley_reactor_200306_planktonic_scaffold_253396_81
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

96262..97290
DNA (1029bp) protein (343aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Phosphate acyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG4_9BACT
phosphate acyltransferase
berkeley_reactor_200306_planktonic_scaffold_253396_82
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

97287..98312
DNA (1026bp) protein (342aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG3_9BACT
3-oxoacyl-ACP synthase
berkeley_reactor_200306_planktonic_scaffold_253396_83
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

98362..98697
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XBG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62847.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_253396_84
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

98844..99926
DNA (1083bp) protein (361aa)
PfkB domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVU9_9BACT
PfkB domain protein {ECO:0000313|EMBL:EDY21541.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ribokinase-like domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_253396_85
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

100033..101307
DNA (1275bp) protein (425aa)
Uncharacterized protein id=4444156 bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
berkeley_reactor_200306_planktonic_scaffold_253396_86
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

101411..102508
DNA (1098bp) protein (366aa)
PfkB domain protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZP46_OPITP
ribokinase-like domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ACB77532.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_253396_87
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

102592..103374
DNA (783bp) protein (261aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=unclassified Opitutaceae RepID=H1IV78_9BACT
gluconate 5-dehydrogenase
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:AHF91478.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
berkeley_reactor_200306_planktonic_scaffold_253396_88
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(103468..104748)
DNA (1281bp) protein (427aa)
Major facilitator superfamily MFS_1 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1XZQ8_9SPHI
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EHQ27750.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
major facilitator superfamily protein
berkeley_reactor_200306_planktonic_scaffold_253396_89
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

104937..105326
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ52_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF58056.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_253396_90
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(105574..106026)
DNA (453bp) protein (151aa)
Single-stranded nucleic acid binding R3H domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJP1_9BACT
Single-stranded nucleic acid binding R3H domain protein {ECO:0000313|EMBL:EEF59917.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
single-stranded nucleic acid binding R3H domain-containing protein
Displaying items 61-90 of 151 in total

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